Atlantic Meridional Transect (AMT)
Data inventories
Cruise — RRS James Cook JC053 (AMT20)
Information has been obtained from cruise reports and cruise personnel. If you notice any errors, please tell us and we will amend our records. If you have data sets which are not held at BODC, please send them to Rob Thomas.
 Data set description  |
Source  |
Status |
|---|---|---|
| 12C and 13C stable isotope probe analysis of methylotrophs - incubations | Stephanie Sargeant and Joanna Dixon | Data not expected |
| 15N nitrogen fixation rate experiments - incubations (CTD bottles) | Andy Rees | Data set overdue — was expected 2011-11-01 |
| Aerosol Optical Depth and Precipitable Water (Microtops Sun Photometer) - surface underway | Tim Smyth and Chris Gallienne | Received |
| Aerosol samples - major ions and trace metals | Alex Baker | Data set overdue — was expected 2013-01-01 |
| Alkenone concentrations (surface underway) | Michael Fraser and Robert Moore | Data set overdue — was expected 2012-01-01 |
| Atmospheric (marine air) and surface ocean (underway) pCO2 measurements - calibrated and quality controlled | Vassilis Kitidis | Data set overdue — was expected 2011-09-01 |
| Bacterial abundance - AFC (CTD bottles) | Ross J Holland et al. | Data set overdue — was expected 2011-09-01 |
| Bacterial abundance - AFC (underway) | Ross J Holland et al. | Data set overdue — was expected 2011-09-01 |
| Bacterial DNA analysis - surface, 33% of incident light and DCM sampled (CTD bottles) | Jack Gilbert | Data set overdue — was expected 2011-09-01 |
| Bacterial respiration 24 hour incubations from surface and DCM water - Winkler (CTD bottles) | Elena Garcia-Martin and Pablo Serret | Received |
| Bio-Optics - Above water UV measurements | Tim Smyth and Chris Gallienne | Received |
| Bio-Optics - Above-water radiance measurements (MicroSAS) | David Drapeau and William M Balch | Data set overdue — was expected 2012-06-01 |
| Bio-Optics - Above-water radiance measurements (TRIOS RAMSES radiometer) | Piotr Kowalczuk | Data set overdue — was expected 2012-07-01 |
| Bio-Optics - AC9 profiles | Victor Martinez-Vicente et al. | Data set overdue — was expected 2012-01-01 |
| Bio-Optics - Backscatter profiles (Hobilabs hydroscat 6 - bb6) | Victor Martinez-Vicente et al. | Data set overdue — was expected 2012-01-01 |
| Bio-Optics - Flow-through measurements (AC9, SBE, TRIOS MicroFlu-CDOM fluorometer, LIIST 100X) | Piotr Kowalczuk | Data set overdue — was expected 2012-07-01 |
| Bio-Optics - Flow-through measurements - Temp, Sal, Fluor, bb (backscattering and acid labile backscattering), absorption and attenuation (9 wavelengths) (AC9, SBE, Wet Star, VSF) | David Drapeau and William M Balch | Received |
| Bio-Optics - FRRF flow-through measurements | Tim Smyth et al. | Data set overdue — was expected 2011-09-01 |
| Bio-Optics - FRRF profiles | Tim Smyth and Chris Gallienne | Received |
| Bio-Optics - UV sensor profiles | Tim Smyth and Chris Gallienne | Data set overdue — was expected 2011-09-01 |
| Bio-Optics - Water leaving reflectance along cruise track (HyperSAS) | Tim Smyth and Chris Gallienne | Data set overdue — was expected 2011-09-01 |
| Carbonate system perturbations - pH, chl-a, flow cytometry, P-I curves, phytoplankton emission spectra (CTD bottles) | Gavin Tilstone and Barbora Hoskova | Received |
| CDOM absorption profiles - LWCC and PSICAM (CTD bottles) | Monika Zablocka and Piotr Kowalczuk | Data set overdue — was expected 2012-07-01 |
| CDOM profiles (CTD bottles) | Gavin Tilstone | Received |
| Ceratium molecular analyses of 18s/28s rRNA (net haul) | David Aldridge et al. | Data not expected |
| CHN analysis in surface dwelling copepods - adult females (surface net tow) | Rachel Harmer et al. | Data set overdue — was expected 2012-04-01 |
| Coccolithophore and coccolithoviruse abundance - Flow cytometry (CTD bottles) | Josef Nissimov et al. | Data set overdue — was expected 2011-09-01 |
| Coccolithophore composition - light microscopy (CTD bottles) | David Drapeau and William M Balch | Received |
| Coccolithophore composition - light microscopy (surface underway) | David Drapeau and William M Balch | Received |
| Community and bacterial respiration incubations (size-fractionated) - ETS in vivo (CTD bottles) | Elena Garcia-Martin and Pablo Serret | Received |
| Continuous oxygen measurements with Aanderaa optode, calibrated with discrete Winkler samples (surface underway) | Johanna Gloel et al. | Data set overdue — was expected 2012-06-01 |
| Continuous underway nav, bath, fluor, met and tsg | John Seddon | Received |
| Copepod population genetic structure (WP2 - vertical haul) | Erica Goetze | Data set overdue — was expected 2012-09-01 |
| CTD profiles (pres,temp,sal,fluor,trans,oxy,PAR,BBRTD) - processed | Rob Thomas et al. | Received — online data delivery available |
| CTD profiles (pres,temp,sal,fluor,trans,oxy,PAR,BBRTD) - raw data files | Jeff Benson and Peter Keen | Received |
| CTD up-cast bottle firing data | Jeff Benson and Peter Keen | Received |
| Dissolved hydrogen concentration continuous measurement from surface waters - air-segmented continuous-flow equilibrator (surface underway) | Michael Fraser and Robert Moore | Data set overdue — was expected 2012-01-01 |
| Dissolved hydrogen concentration profiles - air-segmented continuous-flow equilibrator (CTD bottles) | Michael Fraser and Robert Moore | Data set overdue — was expected 2012-01-01 |
| Dissolved hydrogen incubations spiked with 15N (bucket samples) | Michael Fraser and C Mark Moore | Data set overdue — was expected 2012-01-01 |
| Dissolved oxygen concentrations (CTD bottles) | Johanna Gloel and Jan Kaiser | Received |
| DNA analysis of picophytoplankton community structure (CTD bottles) | M Carolina Grob | Data set overdue — was expected 2011-09-01 |
| DNA extraction and analysis of coccolithophores and associated viruses (CTD bottles) | Josef Nissimov et al. | Data set overdue — was expected 2011-09-01 |
| DOC profiles (CTD bottles) | Monika Zablocka and Piotr Kowalczuk | Received |
| Extracted chlorophyll-a (CTD bottles) | Andy Rees et al. | Received |
| Extracted chlorophyll-a (underway) | Andy Rees et al. | Received |
| Fluorescence Excitation Emission Matrix spectra - Varian Cary Eclipse spectrofluorometer (CTD bottles) | Monika Zablocka and Piotr Kowalczuk | Data set overdue — was expected 2012-07-01 |
| Genetic analysis of methylotrophic microbes | Stephanie Sargeant et al. | Awaiting data — expected 2013-09-01 |
| Gross, net production and dark community respiration (on-deck incubations) | John Stephens and Vassilis Kitidis | Received |
| HPLC analysis of mycosporin-like amino acids (MAAs) in surface dwelling copepods - adult females, eggs and nauplii (surface net tow) | Rachel Harmer and Ruth Airs | Data set overdue — was expected 2012-04-01 |
| HPLC pigments (CTD bottles) | Ruth Airs | Received |
| Mechanisms of carbon assimilation utilised by marine phytoplankton - DNA, RNA, pH, TA, DIC, POC (CTD bottles) | Maeve Eason-Hubbard and Ros Rickaby | Data set overdue — was expected 2011-09-01 |
| Mechanisms of carbon assimilation utilised by marine phytoplankton - DNA, RNA, pH, TA, DIC, POC (surface underway) | Maeve Eason-Hubbard and Ros Rickaby | Data set overdue — was expected 2011-09-01 |
| Mesozooplankton Community Size Structure - biomass OPC (Net hauls) | Chris Gallienne | Data set overdue — was expected 2011-09-01 |
| Mesozooplankton Community Size Structure - biomass OPC (surface underway) | Chris Gallienne | Data set overdue — was expected 2011-09-01 |
| Microplankton incubations with seawater | David Aldridge et al. | Data not expected |
| Microzooplankton community characterisation - FlowCAM (Net hauls) | Manuela Hartmann et al. | Data set overdue — was expected 2011-09-01 |
| Molecular and taxonomic analyses of surface dwelling copepods - adult females, eggs and nauplii (surface net tow) | Rachel Harmer et al. | Data set overdue — was expected 2012-04-01 |
| Mycosporine-like amino acid (MAA) analysis in phytoplankton from surface samples (CTD bottles) | Rachel Harmer and Ruth Airs | Data set overdue — was expected 2012-04-01 |
| Nauplii feeding experiments (surface net tow) | Rachel Harmer et al. | Data set overdue — was expected 2012-04-01 |
| Net community production estimates from dissolved oxygen/argon ratio profiles measured by membrane inlet mass spectrometry (MIMS) on discrete samples (CTD bottles) | Johanna Gloel et al. | Data set overdue — was expected 2012-06-01 |
| Net community production estimates from dissolved oxygen/argon ratios in surface waters measured continuously by membrane inlet mass spectrometry (MIMS) (surface underway) | Johanna Gloel et al. | Data set overdue — was expected 2012-06-01 |
| Neuston community structure - 4% borax buffered formalin and 95% ethanol (surface net tows) | Rachel Harmer et al. | Received |
| nifH expression (CTD bottles) | Andy Rees | Data set overdue — was expected 2012-04-01 |
| Nitrous oxide (N20) continuous underway measurements - Integrated Cavity Output Spectroscopy (surface underway) | Imke Grefe and Jan Kaiser | Data set overdue — was expected 2013-01-01 |
| Nitrous oxide (N20) profiles - stable isotope analysis (CTD bottles) | Imke Grefe and Jan Kaiser | Data set overdue — was expected 2013-01-01 |
| Nutrients micromolar (CTD bottles) | Carolyn Harris | Received |
| Optical backscatter profiles - Wetlabs BBRTD (CTD) | Giorgio Dall'Olmo | Data not expected |
| Photosynthesis-irradiance (P-I) curves and phytoplankton emission spectra from surface and/or DCM samples (CTD bottles) | Gavin Tilstone and Barbora Hoskova | Received |
| Phytoplankton absorption analysis - PABS (CTD bottles) | Gavin Tilstone and Victor Martinez-Vicente | Data set overdue — was expected 2012-01-01 |
| Phytoplankton community analysis - Lugols (CTD bottles) | Rachel Harmer et al. | Data set overdue — was expected 2012-04-01 |
| Phytoplankton community structure and abundance - AFC (CTD bottles) | Glen Tarran | Received |
| PIC, POC, PON and BSi measurements (CTD bottles) | David Drapeau and William M Balch | Received |
| PIC, POC, PON and BSi measurements (surface underway) | David Drapeau and William M Balch | Received |
| Plankton analyses (WP2 - vertical haul) | Mark Ohman | Data set overdue — was expected 2011-09-01 |
| Plankton analyses (WP2 - vertical haul) | Rachel Harmer et al. | Data set overdue — was expected 2012-04-01 |
| POC, PON, POP, chlorophyll-a, fatty acid and protein analysis in the DCM (CTD bottles) - fatty acid and proteins still pending | Rafaella Nobili and Carol Robinson | Received |
| Primary Production (size-frac 14C) profile data (CTD bottles) | Gavin Tilstone | Received |
| Productivity measurements of bacterial and eukaryotic populations using radiotracers | Mike Zubkov et al. | Data set overdue — was expected 2011-09-01 |
| Quantification and variation in cellular DMSP contents of prokaryotes (CTD bottles) | Steve Archer et al. | Data set overdue — was expected 2012-04-01 |
| Rain water samples - Major ion and trace metal analysis | Alex Baker | Data set overdue — was expected 2013-01-01 |
| Respiration measurements (surface and DCM) - continuous oxygen decrease upto 24 hours measured with oxygen microelectrodes (CTD bottles) | Elena Garcia-Martin and Pablo Serret | Data not expected |
| RNA gene expression in picophytoplankton | M Carolina Grob | Data set overdue — was expected 2011-09-01 |
| Salinity samples - bench salinometer (CTD bottles) | Jeff Benson | Received |
| Salinity samples - bench salinometer (underway) | Jeff Benson | Received |
| Seawater pH determination by spectrophotometry using m-cresol purple (CTD bottles) | Vassilis Kitidis et al. | Data set overdue — was expected 2012-04-01 |
| Total Alkalinity samples (CTD bottles) | Vassilis Kitidis et al. | Data set overdue — was expected 2012-04-01 |
| Total lipids analysis - specifically sphoingolipids associated with the cell death mechanism of the coccolithophores (CTD bottles) | Charlotte Worthy | Data set overdue — was expected 2011-09-01 |
| Triple oxygen isotope samples for determination of gross production from surface and below the mixed layer (CTD bottles) | Johanna Gloel et al. | Data set overdue — was expected 2012-06-01 |
| Vessel Mounted ADCP (VMADCP) - 150 kHz - raw data files | John Seddon | Received |
| Vessel Mounted ADCP (VMADCP) - 75 kHz - raw data files | John Seddon | Received |
| Zooplankton community structure - 4% formalin (WP2 vertical haul) | Rafaella Nobili and Carol Robinson | Data set overdue — was expected 2012-09-01 |
| Zooplankton community structure from molecular analysis - ethanol (WP2 vertical haul) | Claudia Castellani | Data not expected |
| Zooplankton metabolic rate determination - respiration, egg production (incubations) | Rafaella Nobili et al. | Data set overdue — was expected 2013-04-01 |
Related AMT pages at BODC
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| BODC's role | Cruise programme | |
| Data policy | Data delivery | |
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