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Metadata Report for BODC Series Reference Number 1921398


Metadata Summary

Data Description

Data Category Water sample data
Instrument Type
NameCategories
Niskin bottle  discrete water samplers
Metrohm 716 DMS Titrino  titrators
Instrument Mounting lowered unmanned submersible
Originating Country United Kingdom
Originator Mr Mark Stinchcombe
Originating Organization National Oceanography Centre, Southampton
Processing Status banked
Online delivery of data Download available - Ocean Data View (ODV) format
Project(s) COMICS
 

Data Identifiers

Originator's Identifier DY086_CTD_DOXY_257:CTD021
BODC Series Reference 1921398
 

Time Co-ordinates(UT)

Start Time (yyyy-mm-dd hh:mm) 2017-12-03 06:17
End Time (yyyy-mm-dd hh:mm) -
Nominal Cycle Interval -
 

Spatial Co-ordinates

Latitude 52.05167 S ( 52° 3.1' S )
Longitude 40.77000 W ( 40° 46.2' W )
Positional Uncertainty Unspecified
Minimum Sensor or Sampling Depth 7.5 m
Maximum Sensor or Sampling Depth 1006.1 m
Minimum Sensor or Sampling Height 2779.9 m
Maximum Sensor or Sampling Height 3778.5 m
Sea Floor Depth 3786.0 m
Sea Floor Depth Source SCILOG
Sensor or Sampling Distribution Unspecified -
Sensor or Sampling Depth Datum Unspecified -
Sea Floor Depth Datum Instantaneous - Depth measured below water line or instantaneous water body surface
 

Parameters

BODC CODERankUnitsTitle
ADEPZZ011MetresDepth (spatial coordinate) relative to water surface in the water body
BOTTFLAG1Not applicableSampling process quality flag (BODC C22)
DOKGWITX1Micromoles per kilogramConcentration of oxygen {O2 CAS 7782-44-7} per unit mass of the water body [dissolved plus reactive particulate phase] by Winkler titration
FIRSEQID1DimensionlessBottle firing sequence number
ROSPOSID1DimensionlessBottle rosette position identifier
SAMPRFNM1DimensionlessSample reference number

Definition of BOTTFLAG

BOTTFLAGDefinition
0The sampling event occurred without any incident being reported to BODC.
1The filter in an in-situ sampling pump physically ruptured during sample resulting in an unquantifiable loss of sampled material.
2Analytical evidence (e.g. surface water salinity measured on a sample collected at depth) indicates that the water sample has been contaminated by water from depths other than the depths of sampling.
3The feedback indicator on the deck unit reported that the bottle closure command had failed. General Oceanics deck units used on NERC vessels in the 80s and 90s were renowned for reporting misfires when the bottle had been closed. This flag is also suitable for when a trigger command is mistakenly sent to a bottle that has previously been fired.
4During the sampling deployment the bottle was fired in an order other than incrementing rosette position. Indicative of the potential for errors in the assignment of bottle firing depth, especially with General Oceanics rosettes.
5Water was reported to be escaping from the bottle as the rosette was being recovered.
6The bottle seals were observed to be incorrectly seated and the bottle was only part full of water on recovery.
7Either the bottle was found to contain no sample on recovery or there was no bottle fitted to the rosette position fired (but SBE35 record may exist).
8There is reason to doubt the accuracy of the sampling depth associated with the sample.
9The bottle air vent had not been closed prior to deployment giving rise to a risk of sample contamination through leakage.

Definition of Rank

  • Rank 1 is a one-dimensional parameter
  • Rank 2 is a two-dimensional parameter
  • Rank 0 is a one-dimensional parameter describing the second dimension of a two-dimensional parameter (e.g. bin depths for moored ADCP data)

Problem Reports

No Problem Report Found in the Database


Data Access Policy

COMICS research programme data access conditions - phase 1

These data are currently restricted to the COMICS Community.


Data Policy

COMICS Data Policy - phase 1

These data are currently restricted to the COMICS Community. The restriction timeline is based on the data submission/accession date due to the amount of time taken to work up some of the data. Individual datasets are restricted to the COMICS project participants for two years after their accession date.


Narrative Documents

Metrohm 716 DMS Titrino titrator

The Metrohm 716 DMS Titrino is a titrator used for five basic methods of titrations. These include DET (Dynamic Equivalence-point Titration), MET (Monotonic Equivalence-point Titration), SET (end-point titration), MEAS (measuring instrument for pH, voltage and temperature) and CAL (pH calibrations) titrations.

The instrument consists of an exchange unit, magnetic swing out stirrer, display, indicator lamps, control keys and a separate keypad. Exchange units are available in brown or clear glass with light protection. The models with light protection or brown glass should be used for light sensitive reagents. The Metrohm 716 has a built-in RS232C interface for communication with a PC and printers. Optional accessories for the Metrohm 716 include Ti stands for rinsing and addition of fresh solvent, balances, analog recorders and sample changers.

Specifications

Measuring input 2 high-impedance measuring inputs for pH, redox and ISE electrodes; 1 reference input for a separate reference electrode; 1 measuring input for polarized electrodes; 1 measuring input for temperature sensor Pt100 or Pt1000
Measuring range pH value 0 ±20; Voltage 0 ±2000 mV; current 0 ±200 µA; temperature -150 + 450 °C
Error of measurement of instrument (without sensors) at 25 °C pH ±0.02; voltage ± 2 mV; temperature as a function of the ambient temperature <0.2 °C in the range of 0 +100 °C; pH value typical 40 µV/K; voltage temperature 0.04 °C/K
Measuring amplifier input resistance >1013Ohm; offset current <3x10-13 A
Measuring amplifier deviation of offset voltage as a function of the ambient temperature 15 µV/K
Polarizer Lpol: 0 ±127µA; Upol: 0±1270 mV, in 10 mV steps
Dosification, Volume of burette cylinder 1, 5, 10, 20 or 50 ml
Dosification, Resolution 10000 steps per burette cylinder
Analog output signal -2000 to 2000 mV
Analog output resolution 1 mV (12 bit)
Nominal operational temperature 5 to 40 °C
Nominal operational temperature 5 to 40 °C

Further details can be found in the manufacturer's specification sheet.

Niskin Bottle

The Niskin bottle is a device used by oceanographers to collect subsurface seawater samples. It is a plastic bottle with caps and rubber seals at each end and is deployed with the caps held open, allowing free-flushing of the bottle as it moves through the water column.

Standard Niskin

The standard version of the bottle includes a plastic-coated metal spring or elastic cord running through the interior of the bottle that joins the two caps, and the caps are held open against the spring by plastic lanyards. When the bottle reaches the desired depth the lanyards are released by a pressure-actuated switch, command signal or messenger weight and the caps are forced shut and sealed, trapping the seawater sample.

Lever Action Niskin

The Lever Action Niskin Bottle differs from the standard version, in that the caps are held open during deployment by externally mounted stainless steel springs rather than an internal spring or cord. Lever Action Niskins are recommended for applications where a completely clear sample chamber is critical or for use in deep cold water.

Clean Sampling

A modified version of the standard Niskin bottle has been developed for clean sampling. This is teflon-coated and uses a latex cord to close the caps rather than a metal spring. The clean version of the Levered Action Niskin bottle is also teflon-coated and uses epoxy covered springs in place of the stainless steel springs. These bottles are specifically designed to minimise metal contamination when sampling trace metals.

Deployment

Bottles may be deployed singly clamped to a wire or in groups of up to 48 on a rosette. Standard bottles and Lever Action bottles have a capacity between 1.7 and 30 L. Reversing thermometers may be attached to a spring-loaded disk that rotates through 180° on bottle closure.

RRS Discovery Cruise DY086 CTD Bottle Oxygen Samples

Originator's Protocol for Data Acquisition and Analysis

Dissolved oxygen samples were collected during cruise DY086 between November 12th 2017 and December 19th 2017 to aid in calibrating the oxygen sensor on the CTD. Samples were obtained from a range of depths using an SBE 911plus Titanium or Stainless Steel CTD unit with 24 10L or 20L Niskin bottles fitted to the rosette sampler respectively. Samples were collected into wide neck borosilicate glass bottles with a silicon tube placed at the bottom of the bottle from the Niskin. The bottles were flushed three times with water from the Niskin bottle to properly rinse them by letting the water overflow, then the bottles were filled and a 1ml manganese (II) chloride solution (600g/l) was added to the sample using an automatic dispenser, followed by 1ml of an alkaline iodide solution (320g/l sodium hydroxide and 600g/l sodium iodide). The bottle lid was then gently inserted into the bottle at a slight angle to avoid bubbles and was shaken vigorously for 30 seconds to allow the reagents to mix and form a precipitate. The bottles then sat for about an hour to let the precipitate settle before being shaken again for another 30 seconds and allowed to settle again. After another hour of letting the precipitate settle, the samples were ready for analysis. Analysis was done using a Metrohm 716 DMS Titrino.

BODC Data Processing Procedures

The oxygen data were supplied to BODC in an Excel spreadsheet. The data were loaded into BODC's database using established BODC data banking procedures with no changes.

The originator's variables were mapped to appropriate BODC parameter codes as follows:

Originator's Variable Originator's Units BODC Parameter Code BODC Units Comment
Oxygen µmol/kg DOKGWITX µmol/kg -

Any flags on the originator's data were mapped to the appropriate equivalent BODC flags. Although some bottles were marked misfired by the originator, BODC did not apply any additional flags to the data from these bottles as the data may still be accurate.

The titanium CTD was used for casts 1, 4, 7, 15, 19, 24, 26, and 29.


Project Information

Controls over Ocean Mesopelagic Interior Carbon Storage: COMICS

COMICS is a four-year collaborative research project that aims to quantify the flow of carbon in the ocean?s ?twilight? zone in order to accurately model global climate change. This ?twilight? zone is the part of the ocean between 100m and 1000m below the sea surface, where only a small amount of light from the sun can still penetrate.

By investigating carbon dynamics in the ocean interior, COMICS will help to improve predictions of future global climate change.

The COMICS project is led by the National Oceanography Centre and is a collaboration between the British Antarctic Survey and the universities of Queen Mary London, Liverpool, Oxford and Southampton. The project received funding from the Natural Environmental Research Council and runs between April 2017 and 2021.


Data Activity or Cruise Information

Data Activity

Start Date (yyyy-mm-dd) 2017-12-03
End Date (yyyy-mm-dd) 2017-12-03
Organization Undertaking ActivityNational Oceanography Centre, Southampton
Country of OrganizationUnited Kingdom
Originator's Data Activity IdentifierDY086_CTD_CTD021
Platform Categorylowered unmanned submersible

BODC Sample Metadata Report for DY086_CTD_CTD021

Sample reference number Nominal collection volume(l) Bottle rosette position Bottle firing sequence number Minimum pressure sampled (dbar) Maximum pressure sampled (dbar) Depth of sampling point (m) Bottle type Sample quality flag Bottle reference Comments
1320332   20.00 6 6  254.70  256.10  252.60 Niskin bottle No problem reported    
1320335   20.00 7 7  255.20  256.30  253.60 Niskin bottle No problem reported    
1320338   20.00 8 8  162.90  164.20  162.40 Niskin bottle No problem reported    
1320341   20.00 9 9  163.30  164.20  162.10 Niskin bottle No problem reported    
1320344   20.00 10 10  112.60  113.20  111.80 Niskin bottle No problem reported    
1320347   20.00 11 11  113.00  114.10  112.90 Niskin bottle Bottle misfire    
1320350   20.00 12 12  112.60  113.70  112.00 Niskin bottle No problem reported    
1320353   20.00 13 13   71.90   72.80   71.80 Niskin bottle No problem reported    
1320356   20.00 14 14   72.00   72.70   71.80 Niskin bottle No problem reported    
1320359   20.00 15 15   72.00   73.00   71.50 Niskin bottle No problem reported    
1320362   20.00 16 16   51.90   52.90   51.80 Niskin bottle No problem reported    
1320365   20.00 17 17   51.90   52.90   51.50 Niskin bottle No problem reported    
1320368   20.00 18 18   52.40   52.80   52.20 Niskin bottle No problem reported    
1320371   20.00 19 19   41.80   42.60   41.80 Niskin bottle No problem reported    
1320374   20.00 20 20   42.00   43.20   42.30 Niskin bottle No problem reported    
1320377   20.00 21 21   21.30   22.40   21.60 Niskin bottle No problem reported    
1320380   20.00 22 22   21.40   22.00   21.70 Niskin bottle No problem reported    
1320383   20.00 23 23    6.10    8.20    7.60 Niskin bottle No problem reported    
1320386   20.00 24 24    6.20    8.30    7.50 Niskin bottle No problem reported    
1322066   20.00 1 1 1016.80 1019.30 1006.10 Niskin bottle No problem reported    
1322069   20.00 2 2  761.70  763.80  754.70 Niskin bottle No problem reported    
1322072   20.00 3 3  508.90  510.40  504.90 Niskin bottle No problem reported    
1322075   20.00 4 4  509.40  509.90  504.40 Niskin bottle No problem reported    
1322078   20.00 5 5  357.90  359.00  354.80 Niskin bottle No problem reported    

Please note:the supplied parameters may not have been sampled from all the bottle firings described in the table above. Cross-match the Sample Reference Number above against the SAMPRFNM value in the data file to identify the relevant metadata.

Related Data Activity activities are detailed in Appendix 1

Cruise

Cruise Name DY086 (COMICS)
Departure Date 2017-11-12
Arrival Date 2017-12-19
Principal Scientist(s)Richard Sanders (National Oceanography Centre, Southampton)
Ship RRS Discovery

Complete Cruise Metadata Report is available here


Fixed Station Information


No Fixed Station Information held for the Series


BODC Quality Control Flags

The following single character qualifying flags may be associated with one or more individual parameters with a data cycle:

Flag Description
Blank Unqualified
< Below detection limit
> In excess of quoted value
A Taxonomic flag for affinis (aff.)
B Beginning of CTD Down/Up Cast
C Taxonomic flag for confer (cf.)
D Thermometric depth
E End of CTD Down/Up Cast
G Non-taxonomic biological characteristic uncertainty
H Extrapolated value
I Taxonomic flag for single species (sp.)
K Improbable value - unknown quality control source
L Improbable value - originator's quality control
M Improbable value - BODC quality control
N Null value
O Improbable value - user quality control
P Trace/calm
Q Indeterminate
R Replacement value
S Estimated value
T Interpolated value
U Uncalibrated
W Control value
X Excessive difference

SeaDataNet Quality Control Flags

The following single character qualifying flags may be associated with one or more individual parameters with a data cycle:

Flag Description
0 no quality control
1 good value
2 probably good value
3 probably bad value
4 bad value
5 changed value
6 value below detection
7 value in excess
8 interpolated value
9 missing value
A value phenomenon uncertain
B nominal value
Q value below limit of quantification

Appendix 1: DY086_CTD_CTD021

Related series for this Data Activity are presented in the table below. Further information can be found by following the appropriate links.

If you are interested in these series, please be aware we offer a multiple file download service. Should your credentials be insufficient for automatic download, the service also offers a referral to our Enquiries Officer who may be able to negotiate access.

Series IdentifierData CategoryStart date/timeStart positionCruise
1921208Water sample data2017-12-03 06:17:0052.05167 S, 40.77 WRRS Discovery DY086 (COMICS)
1965297Water sample data2017-12-03 06:17:0052.05167 S, 40.77 WRRS Discovery DY086 (COMICS)