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Metadata Report for BODC Series Reference Number 2099000


Metadata Summary

Data Description

Data Category Water sample data
Instrument Type
NameCategories
Niskin bottle  discrete water samplers
Marianda VINDTA 3C total inorganic carbon and titration alkalinity analyser  titrators
Instrument Mounting lowered unmanned submersible
Originating Country United Kingdom
Originator Dr Sue Hartman
Originating Organization National Oceanography Centre, Southampton
Processing Status banked
Online delivery of data Download available - Ocean Data View (ODV) format
Project(s) Oceans 2025
 

Data Identifiers

Originator's Identifier JC086_CTD_CO2X_699:C008
BODC Series Reference 2099000
 

Time Co-ordinates(UT)

Start Time (yyyy-mm-dd hh:mm) 2013-05-10 07:45
End Time (yyyy-mm-dd hh:mm) -
Nominal Cycle Interval -
 

Spatial Co-ordinates

Latitude 63.45278 N ( 63° 27.2' N )
Longitude 20.25583 W ( 20° 15.3' W )
Positional Uncertainty 0.05 to 0.1 n.miles
Minimum Sensor or Sampling Depth 5.5 m
Maximum Sensor or Sampling Depth 100.8 m
Minimum Sensor or Sampling Height 107.2 m
Maximum Sensor or Sampling Height 202.5 m
Sea Floor Depth 208.0 m
Sea Floor Depth Source SCILOG
Sensor or Sampling Distribution Unspecified -
Sensor or Sampling Depth Datum Unspecified -
Sea Floor Depth Datum Unspecified -
 

Parameters

BODC CODERankUnitsTitle
ADEPZZ011MetresDepth (spatial coordinate) relative to water surface in the water body
BOTTFLAG1Not applicableSampling process quality flag (BODC C22)
FIRSEQID1DimensionlessBottle firing sequence number
MDMAP0141Micromoles per kilogramTotal alkalinity per unit mass of the water body
ROSPOSID1DimensionlessBottle rosette position identifier
SAMPRFNM1DimensionlessSample reference number
TCO2MSXX1Micromoles per kilogramConcentration of total inorganic carbon {TCO2 CAS 7440-44-0} per unit mass of the water body [dissolved plus reactive particulate phase]

Definition of BOTTFLAG

BOTTFLAGDefinition
0The sampling event occurred without any incident being reported to BODC.
1The filter in an in-situ sampling pump physically ruptured during sample resulting in an unquantifiable loss of sampled material.
2Analytical evidence (e.g. surface water salinity measured on a sample collected at depth) indicates that the water sample has been contaminated by water from depths other than the depths of sampling.
3The feedback indicator on the deck unit reported that the bottle closure command had failed. General Oceanics deck units used on NERC vessels in the 80s and 90s were renowned for reporting misfires when the bottle had been closed. This flag is also suitable for when a trigger command is mistakenly sent to a bottle that has previously been fired.
4During the sampling deployment the bottle was fired in an order other than incrementing rosette position. Indicative of the potential for errors in the assignment of bottle firing depth, especially with General Oceanics rosettes.
5Water was reported to be escaping from the bottle as the rosette was being recovered.
6The bottle seals were observed to be incorrectly seated and the bottle was only part full of water on recovery.
7Either the bottle was found to contain no sample on recovery or there was no bottle fitted to the rosette position fired (but SBE35 record may exist).
8There is reason to doubt the accuracy of the sampling depth associated with the sample.
9The bottle air vent had not been closed prior to deployment giving rise to a risk of sample contamination through leakage.

Definition of Rank

  • Rank 1 is a one-dimensional parameter
  • Rank 2 is a two-dimensional parameter
  • Rank 0 is a one-dimensional parameter describing the second dimension of a two-dimensional parameter (e.g. bin depths for moored ADCP data)

Problem Reports

No Problem Report Found in the Database


Data Access Policy

Open Data supplied by Natural Environment Research Council (NERC)

You must always use the following attribution statement to acknowledge the source of the information: "Contains data supplied by Natural Environment Research Council."


Narrative Documents

Marianda Versatile INstrument for the Determination of Total inorganic carbon and titration Alkalinity (VINDTA) 3C

The VINDTA 3C (Versatile INstrument for the Determination of Total inorganic carbon and titration Alkalinity) is a laboratory alkalinity titration system combined with an extraction unit for coulometric titration, which simultaneously determines the alkalinity and dissolved inorganic carbon content of a sample. The sample transport is performed with peristaltic pumps and acid is added to the sample using a membrane pump. No pressurizing system is required and only one gas supply (nitrogen or dry and CO2-free air) is necessary. The system uses a Metrohm Titrino 719S, an ORION-Ross pH electrode and a Metrohm reference electrode. The burette, the pipette and the analysis cell have a water jacket around them. Precision is typically ± 1 µmol kg-1 for TA and/or DIC in open ocean water.

Further details can be found in the manufacturer's brochure.

Niskin Bottle

The Niskin bottle is a device used by oceanographers to collect subsurface seawater samples. It is a plastic bottle with caps and rubber seals at each end and is deployed with the caps held open, allowing free-flushing of the bottle as it moves through the water column.

Standard Niskin

The standard version of the bottle includes a plastic-coated metal spring or elastic cord running through the interior of the bottle that joins the two caps, and the caps are held open against the spring by plastic lanyards. When the bottle reaches the desired depth the lanyards are released by a pressure-actuated switch, command signal or messenger weight and the caps are forced shut and sealed, trapping the seawater sample.

Lever Action Niskin

The Lever Action Niskin Bottle differs from the standard version, in that the caps are held open during deployment by externally mounted stainless steel springs rather than an internal spring or cord. Lever Action Niskins are recommended for applications where a completely clear sample chamber is critical or for use in deep cold water.

Clean Sampling

A modified version of the standard Niskin bottle has been developed for clean sampling. This is teflon-coated and uses a latex cord to close the caps rather than a metal spring. The clean version of the Levered Action Niskin bottle is also teflon-coated and uses epoxy covered springs in place of the stainless steel springs. These bottles are specifically designed to minimise metal contamination when sampling trace metals.

Deployment

Bottles may be deployed singly clamped to a wire or in groups of up to 48 on a rosette. Standard bottles and Lever Action bottles have a capacity between 1.7 and 30 L. Reversing thermometers may be attached to a spring-loaded disk that rotates through 180° on bottle closure.

JC086 discrete DIC and TA sampling document

Originator's Protocol for Data Acquisition and Analysis

Water samples were collected across 51 stations using a silicon tube and 10L Niskin (Ocean Test Equipment) bottles, which were attached to a stainless steel CTD rosette system.

A total number of 555 samples were sampled, from which 47 samples were taken from the non-toxic underway supply at the same moment as the 5 metre depth Niskin bottle was fired, allowing the comparison of the non-toxic underway supply with the Niskin bottle samples. 36 samples were duplicated to allow estimation of the accuracy of the results.

Samples were spiked with saturated mercuric chloride solution, stoppers were greased (apeizon) and the bottles taped to prevent gas exchange or alteration within the sample. Sampling procedure followed the methodology described by Dickson et al. (2007).

Analysis was undertaken in NOCS by using the Versatile Instrument for Analysis of Dissolved Inorganic Carbon and Titration Alkalinity (VINDTA 3C), which uses a coulometer and a closed titration cell for the analysis of DIC and TA respectively.

For more information on the sampling techniques, please see thecruise report.

Reference

Dickson, A.G., Sabine, C.L. and Christian, J.R. (Eds.) 2007. Guide to best practices for ocean CO2 measurements. PICES Special Publication 3, 191 pp.

BODC Data Processing Procedures

DIC and TA data were supplied to BODC in an excel (.xlsx) format. The data file was converted to .csv format and loaded into the BODC ocean database under the ORACLE Relational Database Management System without modification.

A parameter mapping table template with an example row is provided below;

Originator's Parameter Unit Description BODC Parameter Code BODC Unit Comments
Dissolved Inorganic Carbon (DIC) µmol/kg Concentration of carbon (total inorganic) {TCO2} per unit mass of the water body [dissolved plus reactive particulate phase] TCO2MSXX µmol/kg -
Total Alkalinity (TA) µmol/kg Total alkalinity per unit mass of the water body MDMAP014 µmol/kg -

Project Information

Oceans 2025 - The NERC Marine Centres' Strategic Research Programme 2007-2012

Who funds the programme?

The Natural Environment Research Council (NERC) funds the Oceans 2025 programme, which was originally planned in the context of NERC's 2002-2007 strategy and later realigned to NERC's subsequent strategy (Next Generation Science for Planet Earth; NERC 2007).

Who is involved in the programme?

The Oceans 2025 programme was designed by and is to be implemented through seven leading UK marine centres. The marine centres work together in coordination and are also supported by cooperation and input from government bodies, universities and other partners. The seven marine centres are:

  • National Oceanography Centre, Southampton (NOCS)
  • Plymouth Marine Laboratory (PML)
  • Marine Biological Association (MBA)
  • Sir Alister Hardy Foundation for Marine Science (SAHFOS)
  • Proudman Oceanographic Laboratory (POL)
  • Scottish Association for Marine Science (SAMS)
  • Sea Mammal Research Unit (SMRU)

Oceans2025 provides funding to three national marine facilities, which provide services to the wider UK marine community, in addition to the Oceans 2025 community. These facilities are:

  • British Oceanographic Data Centre (BODC), hosted at POL
  • Permanent Service for Mean Sea Level (PSMSL), hosted at POL
  • Culture Collection of Algae and Protozoa (CCAP), hosted at SAMS

The NERC-run Strategic Ocean Funding Initiative (SOFI) provides additional support to the programme by funding additional research projects and studentships that closely complement the Oceans 2025 programme, primarily through universities.

What is the programme about?

Oceans 2025 sets out to address some key challenges that face the UK as a result of a changing marine environment. The research funded through the programme sets out to increase understanding of the size, nature and impacts of these changes, with the aim to:

  • improve knowledge of how the seas behave, not just now but in the future;
  • help assess what that might mean for the Earth system and for society;
  • assist in developing sustainable solutions for the management of marine resources for future generations;
  • enhance the research capabilities and facilities available for UK marine science.

In order to address these aims there are nine science themes supported by the Oceans 2025 programme:

  • Climate, circulation and sea level (Theme 1)
  • Marine biogeochemical cycles (Theme 2)
  • Shelf and coastal processes (Theme 3)
  • Biodiversity and ecosystem functioning (Theme 4)
  • Continental margins and deep ocean (Theme 5)
  • Sustainable marine resources (Theme 6)
  • Technology development (Theme 8)
  • Next generation ocean prediction (Theme 9)
  • Integration of sustained observations in the marine environment (Theme 10)

In the original programme proposal there was a theme on health and human impacts (Theme 7). The elements of this Theme have subsequently been included in Themes 3 and 9.

When is the programme active?

The programme started in April 2007 with funding for 5 years.

Brief summary of the programme fieldwork/data

Programme fieldwork and data collection are to be achieved through:

  • physical, biological and chemical parameters sampling throughout the North and South Atlantic during collaborative research cruises aboard NERC's research vessels RRS Discovery, RRS James Cook and RRS James Clark Ross;
  • the Continuous Plankton Recorder being deployed by SAHFOS in the North Atlantic and North Pacific on 'ships of opportunity';
  • physical parameters measured and relayed in near real-time by fixed moorings and ARGO floats;
  • coastal and shelf sea observatory data (Liverpool Bay Coastal Observatory (LBCO) and Western Channel Observatory (WCO)) using the RV Prince Madog and RV Quest.

The data is to be fed into models for validation and future projections. Greater detail can be found in the Theme documents.


Data Activity or Cruise Information

Data Activity

Start Date (yyyy-mm-dd) 2013-05-10
End Date (yyyy-mm-dd) 2013-05-10
Organization Undertaking ActivityScottish Association for Marine Science
Country of OrganizationUnited Kingdom
Originator's Data Activity IdentifierJC086_CTD_C008
Platform Categorylowered unmanned submersible

BODC Sample Metadata Report for JC086_CTD_C008

Sample reference number Nominal collection volume(l) Bottle rosette position Bottle firing sequence number Minimum pressure sampled (dbar) Maximum pressure sampled (dbar) Depth of sampling point (m) Bottle type Sample quality flag Bottle reference Comments
943649   10.00 1 1  197.20  198.40  195.80 Niskin bottle No problem reported    
943652   10.00 2 2  197.30  197.80  195.60 Niskin bottle No problem reported    
943655   10.00 3 3  162.20  163.70  161.40 Niskin bottle No problem reported    
943658   10.00 4 4  162.20  163.00  160.90 Niskin bottle No problem reported    
943661   10.00 5 5  141.80  143.30  140.90 Niskin bottle No problem reported    
943664   10.00 6 6  142.00  143.20  141.10 Niskin bottle No problem reported    
943667   10.00 7 7  101.50  102.30  100.90 Niskin bottle No problem reported    
943670   10.00 8 8  101.70  102.00  100.80 Niskin bottle No problem reported    
943673   10.00 9 9   77.00   77.50   76.50 Niskin bottle No problem reported    
943676   10.00 10 10   76.50   77.70   76.50 Niskin bottle No problem reported    
943679   10.00 11 11   51.90   52.40   51.70 Niskin bottle No problem reported    
943682   10.00 12 12   51.80   52.90   51.90 Niskin bottle No problem reported    
943685   10.00 13 13   21.60   22.50   21.90 Niskin bottle No problem reported    
943688   10.00 14 14   21.30   22.60   21.70 Niskin bottle No problem reported    
943691   10.00 15 15   13.90   14.90   14.40 Niskin bottle No problem reported    
943694   10.00 16 16   14.10   14.90   14.20 Niskin bottle No problem reported    
943697   10.00 17 17    5.40    5.80    5.50 Niskin bottle No problem reported    
943700   10.00 18 18    5.30    5.80    5.50 Niskin bottle No problem reported    

Please note:the supplied parameters may not have been sampled from all the bottle firings described in the table above. Cross-match the Sample Reference Number above against the SAMPRFNM value in the data file to identify the relevant metadata.

Related Data Activity activities are detailed in Appendix 1

Cruise

Cruise Name JC086
Departure Date 2013-05-06
Arrival Date 2013-05-26
Principal Scientist(s)Colin R Griffiths (Scottish Association for Marine Science)
Ship RRS James Cook

Complete Cruise Metadata Report is available here


Fixed Station Information


No Fixed Station Information held for the Series


BODC Quality Control Flags

The following single character qualifying flags may be associated with one or more individual parameters with a data cycle:

Flag Description
Blank Unqualified
< Below detection limit
> In excess of quoted value
A Taxonomic flag for affinis (aff.)
B Beginning of CTD Down/Up Cast
C Taxonomic flag for confer (cf.)
D Thermometric depth
E End of CTD Down/Up Cast
G Non-taxonomic biological characteristic uncertainty
H Extrapolated value
I Taxonomic flag for single species (sp.)
K Improbable value - unknown quality control source
L Improbable value - originator's quality control
M Improbable value - BODC quality control
N Null value
O Improbable value - user quality control
P Trace/calm
Q Indeterminate
R Replacement value
S Estimated value
T Interpolated value
U Uncalibrated
W Control value
X Excessive difference

SeaDataNet Quality Control Flags

The following single character qualifying flags may be associated with one or more individual parameters with a data cycle:

Flag Description
0 no quality control
1 good value
2 probably good value
3 probably bad value
4 bad value
5 changed value
6 value below detection
7 value in excess
8 interpolated value
9 missing value
A value phenomenon uncertain
B nominal value
Q value below limit of quantification

Appendix 1: JC086_CTD_C008

Related series for this Data Activity are presented in the table below. Further information can be found by following the appropriate links.

If you are interested in these series, please be aware we offer a multiple file download service. Should your credentials be insufficient for automatic download, the service also offers a referral to our Enquiries Officer who may be able to negotiate access.

Series IdentifierData CategoryStart date/timeStart positionCruise
2098033Water sample data2013-05-10 07:45:3063.45278 N, 20.25583 WRRS James Cook JC086
2098487Water sample data2013-05-10 07:45:3063.45278 N, 20.25583 WRRS James Cook JC086
2099583Water sample data2013-05-10 07:45:3063.45278 N, 20.25583 WRRS James Cook JC086
2100149Water sample data2013-05-10 07:45:3063.45278 N, 20.25583 WRRS James Cook JC086
2100703Water sample data2013-05-10 07:45:3063.45278 N, 20.25583 WRRS James Cook JC086
2101116Water sample data2013-05-10 07:45:3063.45278 N, 20.25583 WRRS James Cook JC086
2101718Water sample data2013-05-10 07:45:3063.45278 N, 20.25583 WRRS James Cook JC086