Metadata Report for BODC Series Reference Number 867569
Metadata Summary
Problem Reports
Data Access Policy
Narrative Documents
Project Information
Data Activity or Cruise Information
Fixed Station Information
BODC Quality Flags
SeaDataNet Quality Flags
Metadata Summary
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Problem Reports
No Problem Report Found in the Database
Data Access Policy
Open Data
These data have no specific confidentiality restrictions for users. However, users must acknowledge data sources as it is not ethical to publish data without proper attribution. Any publication or other output resulting from usage of the data should include an acknowledgment.
If the Information Provider does not provide a specific attribution statement, or if you are using Information from several Information Providers and multiple attributions are not practical in your product or application, you may consider using the following:
"Contains public sector information licensed under the Open Government Licence v1.0."
Narrative Documents
Neil Brown MK3 CTD
The Neil Brown MK3 conductivity-temperature-depth (CTD) profiler consists of an integral unit containing pressure, temperature and conductivity sensors with an optional dissolved oxygen sensor in a pressure-hardened casing. The most widely used variant in the 1980s and 1990s was the MK3B. An upgrade to this, the MK3C, was developed to meet the requirements of the WOCE project.
The MK3C includes a low hysteresis, titanium strain gauge pressure transducer. The transducer temperature is measured separately, allowing correction for the effects of temperature on pressure measurements. The MK3C conductivity cell features a free flow, internal field design that eliminates ducted pumping and is not affected by external metallic objects such as guard cages and external sensors.
Additional optional sensors include pH and a pressure-temperature fluorometer. The instrument is no longer in production, but is supported (repair and calibration) by General Oceanics.
Specifications
These specification apply to the MK3C version.
Pressure | Temperature | Conductivity | |
Range | 6500 m 3200 m (optional) | -3 to 32°C | 1 to 6.5 S cm-1 |
Accuracy | 0.0015% FS 0.03% FS < 1 msec | 0.0005°C 0.003°C < 30 msec | 0.0001 S cm-1 0.0003 S cm-1 < 30 msec |
Further details can be found in the specification sheet.
Aquatracka fluorometer
The Chelsea Instruments Aquatracka is a logarithmic response fluorometer. It uses a pulsed (5.5 Hz) xenon light source discharging between 320 and 800 nm through a blue filter with a peak transmission of 420 nm and a bandwidth at half maximum of 100 nm. A red filter with sharp cut off, 10% transmission at 664 nm and 678 nm, is used to pass chlorophyll-a fluorescence to the sample photodiode.
The instrument may be deployed either in a through-flow tank, on a CTD frame or moored with a data logging package.
Further details can be found in the manufacturer's specification sheet.
Chelsea Technologies Photosynthetically Active Radiation (PAR) Irradiance Sensor
This sensor was originally designed to assist the study of marine photosynthesis. With the use of logarithmic amplication, the sensor covers a range of 6 orders of magnitude, which avoids setting up the sensor range for the expected signal level for different ambient conditions.
The sensor consists of a hollow PTFE 2-pi collector supported by a clear acetal dome diverting light to a filter and photodiode from which a cosine response is obtained. The sensor can be used in moorings, profiling or deployed in towed vehicles and can measure both upwelling and downwelling light.
Specifications
Operation depth | 1000 m |
Range | 2000 to 0.002 µE m-2 s-1 |
Angular Detection Range | ± 130° from normal incidence |
Relative Spectral Sensitivity | flat to ± 3% from 450 to 700 nm down 8% of 400 nm and 36% at 350 nm |
Further details can be found in the manufacturer's specification sheet.
SeaTech Transmissometer
Introduction
The transmissometer is designed to accurately measure the the amount of light transmitted by a modulated Light Emitting Diode (LED) through a fixed-length in-situ water column to a synchronous detector.
Specifications
- Water path length: 5 cm (for use in turbid waters) to 1 m (for use in clear ocean waters).
- Beam diameter: 15 mm
- Transmitted beam collimation: <3 milliradians
- Receiver acceptance angle (in water): <18 milliradians
- Light source wavelength: usually (but not exclusively) 660 nm (red light)
Notes
The instrument can be interfaced to Aanderaa RCM7 current meters. This is achieved by fitting the transmissometer in a slot cut into a customized RCM4-type vane.
A red LED (660 nm) is used for general applications looking at water column sediment load. However, green or blue LEDs can be fitted for specilised optics applications. The light source used is identified by the BODC parameter code.
Further details can be found in the manufacturer's Manual.
RRS Charles Darwin 114 CTD Data Documentation
Instrumentation and Shipboard Procedures
Instrumentation
The CTD profiles were taken with a Neil Brown Systems Mk IIIB CTD including a pressure sensor, a conductivity cell, a platinum resistance thermometer and a Beckmann dissolved oxygen sensor. The latter returned no useful data for this cruise.
The CTD unit was mounted vertically in the centre of a protective cage approximately 2m square.
The following instruments were also attached to the bars of the cage and logged as additional CTD channels:
- Chelsea Instruments Aquatracka configured as a fluorometer.
- SeaTech light backscatter sensor (LBSS nephelometer).
- SeaTech 20-cm path-length red (661 nm) light transmissometer.
- PML 2 PAR (photosynthetically available radiation) scalar irradiance sensors configured to measure downwelling and upwelling radiation.
Note that the downwelling light sensor was actually mounted on a pole placing it in line with the top of the water bottle rosette, 1.75 m above the pressure head. As a result, there was a vertical separation of some two metres between the upwelling and downwelling sensor positions. No geometrical correction of the light data has been attempted.
A General Oceanics 24-bottle tone-fire rosette pylon was fitted to the top of the CTD frame. 10-litre lever-action or externally sprung Niskin bottles were used throughout the cruise.
Data Acquisition
On each cast, the CTD was lowered continuously at 0.5 to 1.0 m s-1 to the closest comfortable proximity to the sea floor. The upcast was done in stages between the bottle firing depths. A tone fire system was installed to minimise the disruption caused to the data stream by the bottle-firing signal.
The data were logged by the RVS ABC data logging system. Output channels from the deck unit were logged at 32 Hz by a microprocessor interface (the Level A) which passed time-stamped averaged cycles at 1 Hz to a Sun workstation (the Level C) via a buffering system (the Level B).
On-Board Data Processing
The raw data comprised ADC counts. These were converted into engineering units (volts for PAR meters, fluorometer LBSS and transmissometers; ml l-1 for oxygen; mmho cm-1for conductivity; °C for temperature; decibars for pressure) by the application of laboratory determined calibrations. Salinity (Practical Salinity Units as defined in Fofonoff and Millard, 1982) was calculated using the standard UNESCO function from the conductivity ratio (conductivity/42.914) and a time lagged temperature.
The data set was submitted to BODC in this form on Quarter Inch Cartridge tapes in RVS internal format for post-cruise processing and data banking.
Post-Cruise Processing and Calibration at BODC
Reformatting
The data were converted into the BODC internal format to allow the use of in-house software tools, notably the workstation graphics editor. In addition to reformatting, the transfer program applied the following modifications to the data:
- Dissolved oxygen was converted from ml/l to µM by multiplication by 44.66.
- Transmissometer voltages were corrected to the manufacturer's specified voltage by ratio using transmissometer air readings taken during the cruise (see the calibration section for details). The voltages were then converted to percentage transmission by multiplying them by 20 and to attenuance using the algorithm:
attenuance (m-1) = -5 loge (% transmission/100) |
Editing
Reformatted CTD data were transferred onto a high-speed graphics workstation. Using custom in-house graphics editors, downcasts and upcasts were differentiated and the limits of the downcasts and upcasts were manually flagged.
Spikes on all the downcast channels were manually flagged. No data values were edited or deleted; flagging was achieved by modification of the associated quality control flag.
The pressure ranges over which the bottle samples had been collected were logged by manual interaction with the software. Usually, clusters of points recorded while the CTD was held stationary were used to determine this. These pressure ranges were subsequently used, in conjunction with a geometrical correction for the position of the water bottles with respect to the CTD pressure transducer, to determine the pressure range of data to be averaged for calibration values.
Once screened on the workstation, the CTD downcasts were loaded into a database under the ORACLE Relational Database Management System. 49 casts were loaded from leg A, including a yo-yo cast that has been loaded to the system as a further 34 casts. 34 casts were loaded from leg B. These were later migrated to the National Oeanographic Database.
Calibration
With the exception of pressure, calibrations were done by comparison of CTD data against measurements made on water bottle samples or from the reversing thermometers mounted on the water bottles as in the case of temperature. In general, values were averaged from the CTD downcasts but where visual inspection of the data showed significant hysteresis values were manually extracted from the CTD upcasts.
All calibrations described here have been applied to the data.
Pressure
The pressure calibration was derived by averaging pressures logged in air. The data from leg A showed a clear bimodal distribution. Consequently, two calibrations were produced.
The mean corrections obtained were:
Leg A (CTD01-CTD08): | Corrected pressure = Raw pressure + 3.77 (SD 0.27) |
Leg A (CTD09-CTD49): | Corrected pressure = Raw pressure + 2.81 (SD 0.34) |
Leg B (CTD50-CTD83): | Corrected pressure = Raw pressure + 3.08 (SD 0.33) |
Temperature
CTD temperatures were compared with calibrated digital reversing thermometer data. Excellent agreement was obtained with no evidence of drift or sudden offsets at any stage during the cruise. Consequently, no adjustment has been made to the CTD temperature data.
Salinity
The CTD salinity data were calibrated against 8 (leg A) and 11 (leg B) water bottle samples analysed on a Guildline Autosal bench salinometer. The following corrections were obtained:
Leg A: | Corrected salinity = Raw salinity + 0.042 | (SD 0.008) |
Leg B: | Corrected salinity = Raw salinity + 0.029 | (SD 0.006) |
Chlorophyll
The fluorometer data were calibrated against extracted chlorophyll data assayed by HPLC, which were available for both legs of the cruise. Note that the data set supplied did not have chlorophyll-a resolved into normal and diavinyl forms.
Two fluorometers were deployed on the CTD during CD114. The instrument originally fitted (SA-254) was replaced by SA-234 after CTD60 on leg B, as the signal from SA-254 was extremely noisy. This can be seen in the calibrated chlorophyll data, especially at low chlorophyll concentrations.
The calibration strategy adopted was to calibrate each instrument rather than each leg, as there were insufficient data to calibrate the casts using SA-254 on leg B separately.
The calibrations obtained were:
SA-254: | Chlorophyll (mg m-3) = 0.2572 * evoltage - 0.606 | (N=129, R2=76%) |
SA-234 | Chlorophyll (mg m-3) = 1.0248 * evoltage - 1.3735 | (N=72, R2=85%) |
Optical Attenuance
There was a problem with the transmissometer calibration. No air readings were taken on the cruise and the only air readings on the instrument record sheet were taken in the laboratory using a voltmeter attached directly to the transmissometer. The value obtained (4.665 V) was virtually identical to the manufacturer's value (4.669 V).
No readings were available through the CTD electronics, and experience from other cruises has shown that these are significantly lower than direct measurements. The data were initially processed on the basis of the direct reading and the resulting attenuance values were obviously high.
Subsequent research revealed that the transmissometer had been used with the same CTD on a Discovery cruise immediately prior to CD114 for which air readings were available. The final reading from this cruise (4.580 V) was used to determine an attenuance correction of -0.092 per m. This has been applied to the data as a calibration.
Nephelometer
The voltages logged by the ABC system from the SeaTech light backscatter sensor have been included in the database without the application of any further calibration.
Oxygen
There were problems with the dissolved oxygen data for both CD114A and B. Data logged during CTD upcasts were significantly lower and had opposite slopes to the data logged during the corresponding downcasts. An attempt was made to calibrate the downcast data against bottle data assayed by Winkler titration, but the relationship was extremely weak. Individual cast calibrations were then attempted, but the calibrated data made no sense when reviewed in conjunction with the chlorophyll data, which is hardly surprising considering the dramatic hysteresis observed. Consequently, the decision was taken to remove the dissolved oxygen data from the final data set.
Upwelling and Downwelling Irradiance
The following calibrations were applied to the voltages:
Downwelling irradiance (µEm-2s-1) = exp (-5.000*voltage + 6.536) * 0.0375
Sensor 11
Upwelling irradiance (µEm-2s-1) = exp (-4.970*voltage + 6.426) * 0.0375
Sensor 8
Note that the scaling factor (0.0375) is an empirically derived term that converts the data from µWcm-2 to µEm-2s-1. Consequently, the data may be converted to Wm-2 if required by dividing by 3.75.
Data Reduction
Once all screening and calibration procedures were completed, the data set was binned to 2 db (casts deeper than 100 db) or 1 db (casts shallower than 100 db). The binning algorithm excluded any data points flagged suspect and attempted linear interpolation over gaps up to 3 bins wide. If any gaps larger than this were encountered, the data in the gaps were set null.
Oxygen saturation has been computed using the algorithm of Benson and Krause (1984).
Warnings
The chlorophyll data for casts CTD01-CTD60 are unusually noisy.
References
Benson B.B. and Krause D. jnr. 1984. The concentration and isotopic fractionation of oxygen dissolved in fresh water and sea water in equilibrium with the atmosphere. Limnol. Oceanogr. 29 pp.620-632.
Fofonoff N.P. and Millard Jr., R.C. 1982. Algorithms for Computation of Fundamental Properties of Seawater. UNESCO Technical Papers in Marine Science 44.
Project Information
Ocean Margin EXchange (OMEX) II - II
Introduction
OMEX was a European multidisciplinary oceanographic research project that studied and quantified the exchange processes of carbon and associated elements between the continental shelf of western Europe and the open Atlantic Ocean. The project ran in two phases known as OMEX I (1993-1996) and OMEX II - II (1997-2000), with a bridging phase OMEX II - I (1996-1997). The project was supported by the European Union under the second and third phases of its MArine Science and Technology Programme (MAST) through contracts MAS2-CT93-0069 and MAS3-CT97-0076. It was led by Professor Roland Wollast from Université Libre de Bruxelles, Belgium and involved more than 100 scientists from 10 European countries.
Scientific Objectives
The aim of the Ocean Margin EXchange (OMEX) project was to gain a better understanding of the physical, chemical and biological processes occurring at the ocean margins in order to quantify fluxes of energy and matter (carbon, nutrients and other trace elements) across this boundary. The research culminated in the development of quantitative budgets for the areas studied using an approach based on both field measurements and modeling.
OMEX II - II (1997-2000)
The second phase of OMEX concentrated exclusively on the Iberian Margin, although RV Belgica did make some measurements on La Chapelle Bank whilst on passage to Zeebrugge. This is a narrow-shelf environment, which contrasts sharply with the broad shelf adjacent to the Goban Spur. This phase of the project was also strongly multidisciplinary in approach, covering physics, chemistry, biology and geology.
There were a total of 33 OMEX II - II research cruises, plus 23 CPR tows, most of which were instrumented. Some of these cruises took place before the official project start date of June 1997.
Data Availability
Field data collected during OMEX II - II have been published by BODC as a CD-ROM product, entitled:
- OMEX II Project Data Set (three discs)
Further descriptions of this product and order forms may be found on the BODC web site.
The data are also held in BODC's databases and subsets may be obtained by request from BODC.
Data Activity or Cruise Information
Cruise
Cruise Name | CD114A |
Departure Date | 1998-07-29 |
Arrival Date | 1998-08-11 |
Principal Scientist(s) | Ian Joint (Plymouth Marine Laboratory) |
Ship | RRS Charles Darwin |
Complete Cruise Metadata Report is available here
Fixed Station Information
No Fixed Station Information held for the Series
BODC Quality Control Flags
The following single character qualifying flags may be associated with one or more individual parameters with a data cycle:
Flag | Description |
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Blank | Unqualified |
< | Below detection limit |
> | In excess of quoted value |
A | Taxonomic flag for affinis (aff.) |
B | Beginning of CTD Down/Up Cast |
C | Taxonomic flag for confer (cf.) |
D | Thermometric depth |
E | End of CTD Down/Up Cast |
G | Non-taxonomic biological characteristic uncertainty |
H | Extrapolated value |
I | Taxonomic flag for single species (sp.) |
K | Improbable value - unknown quality control source |
L | Improbable value - originator's quality control |
M | Improbable value - BODC quality control |
N | Null value |
O | Improbable value - user quality control |
P | Trace/calm |
Q | Indeterminate |
R | Replacement value |
S | Estimated value |
T | Interpolated value |
U | Uncalibrated |
W | Control value |
X | Excessive difference |
SeaDataNet Quality Control Flags
The following single character qualifying flags may be associated with one or more individual parameters with a data cycle:
Flag | Description |
---|---|
0 | no quality control |
1 | good value |
2 | probably good value |
3 | probably bad value |
4 | bad value |
5 | changed value |
6 | value below detection |
7 | value in excess |
8 | interpolated value |
9 | missing value |
A | value phenomenon uncertain |
B | nominal value |
Q | value below limit of quantification |