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Metadata Report for BODC Series Reference Number 1056978


Metadata Summary

Data Description

Data Category CTD or STD cast
Instrument Type
NameCategories
Sea-Bird SBE 43 Dissolved Oxygen Sensor  dissolved gas sensors
Sea-Bird SBE 911plus CTD  CTD; water temperature sensor; salinity sensor
Paroscientific 410K Pressure Transducer  water temperature sensor; water pressure sensors
Sea-Bird SBE 3plus (SBE 3P) temperature sensor  water temperature sensor
Sea-Bird SBE 4C conductivity sensor  salinity sensor
Chelsea Technologies Group Aquatracka III fluorometer  fluorometers
Chelsea Technologies Group Alphatracka II transmissometer  transmissometers
Instrument Mounting lowered unmanned submersible
Originating Country United Kingdom
Originator Dr Carol Robinson
Originating Organization Plymouth Marine Laboratory
Processing Status banked
Online delivery of data Download available - Ocean Data View (ODV) format
Project(s) Atlantic Meridional Transect Phase2(AMT)
 

Data Identifiers

Originator's Identifier A13_33
BODC Series Reference 1056978
 

Time Co-ordinates(UT)

Start Time (yyyy-mm-dd hh:mm) 2003-09-26 03:06
End Time (yyyy-mm-dd hh:mm) -
Nominal Cycle Interval 1.0 decibars
 

Spatial Co-ordinates

Latitude 9.95250 N ( 9° 57.2' N )
Longitude 21.84117 W ( 21° 50.5' W )
Positional Uncertainty 0.0 to 0.01 n.miles
Minimum Sensor or Sampling Depth 0.5 m
Maximum Sensor or Sampling Depth 998.39 m
Minimum Sensor or Sampling Height 4012.71 m
Maximum Sensor or Sampling Height 5010.6 m
Sea Floor Depth 5011.1 m
Sea Floor Depth Source -
Sensor or Sampling Distribution Variable common depth - All sensors are grouped effectively at the same depth, but this depth varies significantly during the series
Sensor or Sampling Depth Datum Instantaneous - Depth measured below water line or instantaneous water body surface
Sea Floor Depth Datum Instantaneous - Depth measured below water line or instantaneous water body surface
 

Parameters

BODC CODERankUnitsTitle
ATTNDR011per metreAttenuation (red light wavelength) per unit length of the water body by 25cm path length red light transmissometer
CPHLPM011Milligrams per cubic metreConcentration of chlorophyll-a {chl-a CAS 479-61-8} per unit volume of the water body [particulate >unknown phase] by in-situ chlorophyll fluorometer and manufacturer's calibration applied
CPHLPS011Milligrams per cubic metreConcentration of chlorophyll-a {chl-a CAS 479-61-8} per unit volume of the water body [particulate >unknown phase] by in-situ chlorophyll fluorometer and calibration against sample data
DOXYSC011Micromoles per litreConcentration of oxygen {O2 CAS 7782-44-7} per unit volume of the water body [dissolved plus reactive particulate phase] by Sea-Bird SBE 43 sensor and calibration against sample data
OXYSSC011PercentSaturation of oxygen {O2 CAS 7782-44-7} in the water body [dissolved plus reactive particulate phase] by Sea-Bird SBE 43 sensor and calibration against sample data and computation from concentration using Benson and Krause algorithm
POTMCV011Degrees CelsiusPotential temperature of the water body by computation using UNESCO 1983 algorithm
PRESPR011DecibarsPressure (spatial coordinate) exerted by the water body by profiling pressure sensor and correction to read zero at sea level
PSALCC011DimensionlessPractical salinity of the water body by CTD and computation using UNESCO 1983 algorithm and calibration against independent measurements
SIGTPR011Kilograms per cubic metreSigma-theta of the water body by CTD and computation from salinity and potential temperature using UNESCO algorithm
TEMPCU011Degrees CelsiusTemperature of the water body by CTD and NO verification against independent measurements

Definition of Rank

  • Rank 1 is a one-dimensional parameter
  • Rank 2 is a two-dimensional parameter
  • Rank 0 is a one-dimensional parameter describing the second dimension of a two-dimensional parameter (e.g. bin depths for moored ADCP data)

Problem Reports

Problem Report

Cast A13_03

The pressure values were negative throughout the profile and the data were not banked.

Cast A13_04

The primary temperature, salinity, dissolved oxygen and oxygen saturation channels were suspect for the whole profile of cast 04. Secondary temperature and sailinity were used to calculate potential temperature and sigma theta.

Cast A13_07

On 16/09/2003 the CTD wire snapped during initial winching of the CTD, so the early morning casts were cancelled and cast A13_07 corresponded to an on-board test. The data were not banked

Cast A13_45

The primary temperature and salinity channels were suspect for the >100 db profile of cast 45. The dissolved oxygen data for AMT13_45 were suspect. These data have been excluded from the final data set and the secondary salinity and temperature channels should be used instead.

Beam attenuance

The transmissometers suffered from operational difficulties due to the high temperature; casts 31 to 51 appeared to be affected, and users should take account of quality control flags. Where data are binned to 1 decibar, there will be large sections of these casts where the data are null, due to the absence of good quality data for each bin.

The transmissometer has been calibrated with pure water as the reference for 100% transmission and therefore beam attenuation values in clear water should be close to 0 m-1. Chelsea Instruments advise that ALPHAtracka is calibrated at the factory at 20°C in distilled water with an electrical conductivity less than one µS cm-1 and filtered to better than 5 µm and that it is possible that the user will encounter water which is purer than that used during the calibration. Indeed the minimum attenuance values for the profiles were lower then 0 m-1, suggesting that the calibration procedure recommended by Sea-Bird and Chelsea Instruments may need adjusting to use deep clear oceanic water as the reference for 100% transmission. The attenuance data will need further offset correction to bring them in line with recognised values. Whether this should be done for the dataset as a whole or on a cast by cast basis is for the user to decide based on their requirements. The absolute attenuation values are therefore questionable but the relative profile should be reliable except for profiles where hysteresis was a problem.

RSS James Clark Ross Cruise AMT13 CTD Data Quality Document

Fluorescence (Chelsea Technology Group (CTG) Aquatracka MKIII fluorometer)

The nominal chlorophyll-a values have been calculated from the CTG Aquatracka MKIII fluorometer data (with manufacturer's calibration applied) from the up-cast at bottle firing and the fluorometric chlorophyll-a data from sampled bottles. Where samples were not supplied or too few to generate a calibration and could not be grouped with other casts, the fluorometer profiles have not been calibrated. The sampling strategy for the extracted chlorophyll-a dataset used to calibrate the fluorometer focused on the upper water column, therefore the calibration is biased towards these depths. The calibration may not be as reliable below depths ~150m. Casts A13_01, A13_23, A13_67, A13_70, A13_73 and A13_78 have not been calibrated. The extracted chlorophyll-a dataset is available for users to derive their own calibrations should they wish.

Attenuance

Due to transmissometer calibration issues, many of the attenuance values were negative (beyond the range of the parameter). All negative values were flagged 'M'. This does not necessarily mean that the data are scientifically useless, just that the calibration coefficients may be slightly out. Where previous 'T' flags were overwritten, the original flagged data are available on request.

Upwelling and downwelling sub-surface PAR irradiance

For downwelling PAR, some data points were beyond the maximum range of the parameter and so were flagged as suspect. Upwelling and downwelling PAR sensors were only deployed on shallow casts. The downwelling profiles show some variablility for the shallower part of the profile, which may be a result of shading from the vessel.


Data Access Policy

Open Data

These data have no specific confidentiality restrictions for users. However, users must acknowledge data sources as it is not ethical to publish data without proper attribution. Any publication or other output resulting from usage of the data should include an acknowledgment.

If the Information Provider does not provide a specific attribution statement, or if you are using Information from several Information Providers and multiple attributions are not practical in your product or application, you may consider using the following:

"Contains public sector information licensed under the Open Government Licence v1.0."


Narrative Documents

Sea-Bird Dissolved Oxygen Sensor SBE 43 and SBE 43F

The SBE 43 is a dissolved oxygen sensor designed for marine applications. It incorporates a high-performance Clark polarographic membrane with a pump that continuously plumbs water through it, preventing algal growth and the development of anoxic conditions when the sensor is taking measurements.

Two configurations are available: SBE 43 produces a voltage output and can be incorporated with any Sea-Bird CTD that accepts input from a 0-5 volt auxiliary sensor, while the SBE 43F produces a frequency output and can be integrated with an SBE 52-MP (Moored Profiler CTD) or used for OEM applications. The specifications below are common to both.

Specifications

Housing Plastic or titanium
Membrane

0.5 mil- fast response, typical for profile applications

1 mil- slower response, typical for moored applications

Depth rating

600 m (plastic) or 7000 m (titanium)

10500 m titanium housing available on request

Measurement range 120% of surface saturation
Initial accuracy 2% of saturation
Typical stability 0.5% per 1000 h

Further details can be found in the manufacturer's specification sheet.

James Clarke Ross Cruise AMT13 CTD Instrumentation

The CTD unit was a Sea-Bird Electronics 911plus system, with dissolved oxygen sensor. The CTD was fitted with a transmissometer, a fluorometer, down and up welling PAR sensors. All instruments were attached to a Sea-Bird SBE 32 carousel. The table below lists more detailed information about the various sensors.

Sensor Model Serial Number Calibration Comments
Pressure transducer Digiquartz temperature compensated pressure sensor 78958 17/06/2003 -
Conductivity sensor 1 SBE 4C 2571 31/07/2003 -
Conductivity sensor 2 SBE 4C 2231 19/07/2003 -
Temperature sensor 1 SBE 3P 4105 31/07/2003 -
Temperature sensor 2 SBE 3P 2674 31/07/2003 -
Dissolved oxygen SBE 43 43B-0013 20/03/2001 Replaced for casts 55 and 56
Transmissometer Chelsea MkII Alphatracka 161-2642-03 05/09/1996 0.25 m path
Fluorometer Chelsea MkIII Aquatracka 088-242 28/04/2001 -
PAR - upwelling Chelsea PAR sensor 08 20/01/2003 -
PAR - downwelling Chelsea PAR sensor 12 05/05/1999 -
Light Back-Scatter Sea Tech LBSS 400 n/a No calibration sheet - only raw voltage provided

Change of sensors during cruise: The oxygen sensor was replaced with a BAS sensor (s/n 43B-0245 calibration date 27/08/2002) for casts A13_55 and A13_56.

Sampling device

Rosette sampling system equipped with 24 x 20 l sampling bottles (manufactured by Ocean Test Equipment Inc.).

Sea-Bird Electronics SBE 911 and SBE 917 series CTD profilers

The SBE 911 and SBE 917 series of conductivity-temperature-depth (CTD) units are used to collect hydrographic profiles, including temperature, conductivity and pressure as standard. Each profiler consists of an underwater unit and deck unit or SEARAM. Auxiliary sensors, such as fluorometers, dissolved oxygen sensors and transmissometers, and carousel water samplers are commonly added to the underwater unit.

Underwater unit

The CTD underwater unit (SBE 9 or SBE 9 plus) comprises a protective cage (usually with a carousel water sampler), including a main pressure housing containing power supplies, acquisition electronics, telemetry circuitry, and a suite of modular sensors. The original SBE 9 incorporated Sea-Bird's standard modular SBE 3 temperature sensor and SBE 4 conductivity sensor, and a Paroscientific Digiquartz pressure sensor. The conductivity cell was connected to a pump-fed plastic tubing circuit that could include auxiliary sensors. Each SBE 9 unit was custom built to individual specification. The SBE 9 was replaced in 1997 by an off-the-shelf version, termed the SBE 9 plus, that incorporated the SBE 3 plus (or SBE 3P) temperature sensor, SBE 4C conductivity sensor and a Paroscientific Digiquartz pressure sensor. Sensors could be connected to a pump-fed plastic tubing circuit or stand-alone.

Temperature, conductivity and pressure sensors

The conductivity, temperature, and pressure sensors supplied with Sea-Bird CTD systems have outputs in the form of variable frequencies, which are measured using high-speed parallel counters. The resulting count totals are converted to numeric representations of the original frequencies, which bear a direct relationship to temperature, conductivity or pressure. Sampling frequencies for these sensors are typically set at 24 Hz.

The temperature sensing element is a glass-coated thermistor bead, pressure-protected inside a stainless steel tube, while the conductivity sensing element is a cylindrical, flow-through, borosilicate glass cell with three internal platinum electrodes. Thermistor resistance or conductivity cell resistance, respectively, is the controlling element in an optimized Wien Bridge oscillator circuit, which produces a frequency output that can be converted to a temperature or conductivity reading. These sensors are available with depth ratings of 6800 m (aluminium housing) or 10500 m (titanium housing). The Paroscientific Digiquartz pressure sensor comprises a quartz crystal resonator that responds to pressure-induced stress, and temperature is measured for thermal compensation of the calculated pressure.

Additional sensors

Optional sensors for dissolved oxygen, pH, light transmission, fluorescence and others do not require the very high levels of resolution needed in the primary CTD channels, nor do these sensors generally offer variable frequency outputs. Accordingly, signals from the auxiliary sensors are acquired using a conventional voltage-input multiplexed A/D converter (optional). Some Sea-Bird CTDs use a strain gauge pressure sensor (Senso-Metrics) in which case their pressure output data is in the same form as that from the auxiliary sensors as described above.

Deck unit or SEARAM

Each underwater unit is connected to a power supply and data logging system: the SBE 11 (or SBE 11 plus) deck unit allows real-time interfacing between the deck and the underwater unit via a conductive wire, while the submersible SBE 17 (or SBE 17 plus) SEARAM plugs directly into the underwater unit and data are downloaded on recovery of the CTD. The combination of SBE 9 and SBE 17 or SBE 11 are termed SBE 917 or SBE 911, respectively, while the combinations of SBE 9 plus and SBE 17 plus or SBE 11 plus are termed SBE 917 plus or SBE 911 plus.

Specifications

Specifications for the SBE 9 plus underwater unit are listed below:

Parameter Range Initial accuracy Resolution at 24 Hz Response time
Temperature -5 to 35°C 0.001°C 0.0002°C 0.065 sec
Conductivity 0 to 7 S m-1 0.0003 S m-1 0.00004 S m-1 0.065 sec (pumped)
Pressure 0 to full scale (1400, 2000, 4200, 6800 or 10500 m) 0.015% of full scale 0.001% of full scale 0.015 sec

Further details can be found in the manufacturer's specification sheet.

Chelsea Technologies Group Aquatracka MKIII fluorometer

The Chelsea Technologies Group Aquatracka MKIII is a logarithmic response fluorometer. Filters are available to enable the instrument to measure chlorophyll, rhodamine, fluorescein and turbidity.

It uses a pulsed (5.5 Hz) xenon light source discharging along two signal paths to eliminate variations in the flashlamp intensity. The reference path measures the intensity of the light source whilst the signal path measures the intensity of the light emitted from the specimen under test. The reference signal and the emitted light signals are then applied to a ratiometric circuit. In this circuit, the ratio of returned signal to reference signal is computed and scaled logarithmically to achieve a wide dynamic range. The logarithmic conversion accuracy is maintained at better than one percent of the reading over the full output range of the instrument.

Two variants of the instrument are available, both manufactured in titanium, capable of operating in depths from shallow water down to 2000 m and 6000 m respectively. The optical characteristics of the instrument in its different detection modes are visible below:

Excitation Chlorophyll a Rhodamine Fluorescein Turbidity
Wavelength (nm) 430 500 485 440*
Bandwidth (nm) 105 70 22 80*
Emission Chlorophyll a Rhodamine Fluorescein Turbidity
Wavelength (nm) 685 590 530 440*
Bandwidth (nm) 30 45 30 80*

* The wavelengths for the turbidity filters are customer selectable but must be in the range 400 to 700 nm. The same wavelength is used in the excitation path and the emission path.

The instrument measures chlorophyll a, rhodamine and fluorescein with a concentration range of 0.01 µg l-1 to 100 µg l-1. The concentration range for turbidity is 0.01 to 100 FTU (other wavelengths are available on request).

The instrument accuracy is ± 0.02 µg l-1 (or ± 3% of the reading, whichever is greater) for chlorophyll a, rhodamine and fluorescein. The accuracy for turbidity, over a 0 - 10 FTU range, is ± 0.02 FTU (or ± 3% of the reading, whichever is greater).

Further details are available from the Aquatracka MKIII specification sheet.

Chelsea Technologies Group ALPHAtracka and ALPHAtracka II transmissometers

The Chelsea Technologies Group ALPHAtracka (the Mark I) and its successor, the ALPHAtracka II (the Mark II), are both accurate (< 0.3 % fullscale) transmissometers that measure the beam attenuation coefficient at 660 nm. Green (565 nm), yellow (590 nm) and blue (470 nm) wavelength variants are available on special order.

The instrument consists of a Transmitter/Reference Assembly and a Detector Assembly aligned and spaced apart by an open support frame. The housing and frame are both manufactured in titanium and are pressure rated to 6000 m depth.

The Transmitter/Reference housing is sealed by an end cap. Inside the housing an LED light source emits a collimated beam through a sealed window. The Detector housing is also sealed by an end cap. A signal photodiode is placed behind a sealed window to receive the collimated beam from the Transmitter.

The primary difference between the ALPHAtracka and ALPHAtracka II is that the Alphatracka II is implemented with surface-mount technology; this has enabled a much smaller diameter pressure housing to be used while retaining exactly the same optical train as in the Mark I. Data from the Mark II version are thus fully compatible with that already obtained with the Mark I. The performance of the Mark II is further enhanced by two electronic developments from Chelsea Technologies Group - firstly, all items are locked in a signal nulling loop of near infinite gain and, secondly, the signal output linearity is inherently defined by digital circuitry only.

Among other advantages noted above, these features ensure that the optical intensity of the Mark II, indicated by the output voltage, is accurately represented by a straight line interpolation between a reading near full-scale under known conditions and a zero reading when blanked off.

For optimum measurements in a wide range of environmental conditions, the Mark I and Mark II are available in 5 cm, 10 cm and 25 cm path length versions. Output is default factory set to 2.5 volts but can be adjusted to 5 volts on request.

Further details about the Mark II instrument are available from the Chelsea Technologies Group ALPHAtrackaII specification sheet.

Paroscientific Absolute Pressure Transducers Series 3000 and 4000

Paroscientific Series 3000 and 4000 pressure transducers use a Digiquartz pressure sensor to provide high accuracy and precision data. The sensor comprises a quartz crystal resonator that responds to pressure-induced stress, and temperature is measured for thermal compensation of the calculated pressure.

The 3000 series of transducers includes one model, the 31K-101, whereas the 4000 series includes several models, listed in the table below. All transducers exhibit repeatability of better than ±0.01% full pressure scale, hysteresis of better than ±0.02% full scale and acceleration sensitivity of ±0.008% full scale /g (three axis average). Pressure resolution is better than 0.0001% and accuracy is typically 0.01% over a broad range of temperatures.

Differences between the models lie in their pressure and operating temperature ranges, as detailed below:

Model Max. pressure (psia) Max. pressure (MPa) Temperature range (°C)
31K-101 1000 6.9 -54 to 107
42K-101 2000 13.8 0 to 125
43K-101 3000 20.7 0 to 125
46K-101 6000 41.4 0 to 125
410K-101 10000 68.9 0 to 125
415K-101 15000 103 0 to 50
420K-101 20000 138 0 to 50
430K-101 30000 207 0 to 50
440K-101 40000 276 0 to 50

Further details can be found in the manufacturer's specification sheet.

James Clarke Ross Cruise AMT13 CTD Processing

Sampling strategy

A total of 78 successful CTD casts were made during the cruise. Rosette bottles were fired throughout the water column on the upcast of most profiles. Data were measured at 24 Hz by a PC running SEASAVE, Sea-Bird's data acquisition software. The raw data files were supplied to BODC after the cruise.

Originator's processing

Only a subset of files had been partially processed on board during the cruise. The raw data were therefore reprocessed at BODC to produce a homogeneous set of CTD data files for this cruise. BODC used the latest version of the SeaBird Processing software available at the time to process the raw binary data files (DAT files) based on information held in the sensor configuration files (CON files), and bottle firing files (BL).

BODC post-processing and screening

BODC used the latest version of the SeaBird Processing software available at the time to process the raw binary data files (DAT files) based on information held in the sensor configuration files (CON files), and bottle firing files (BL).

  • Sea-Bird processing

    The CON files were first checked for any changes which may have occurred during the cruise, with the exception of the transmissometer coefficients that changed on a cast by cast basis to account for source decay, none were made. The information was also cross checked against information held in the sensors' calibration reports.

    The following SeaBird routines were then carried out using SBE Data Processing software version 5.30a: DATCNV, CELLTM, FILTER, LOOPEDIT, DERIVE, BINAVG, STRIP. After CELLTM was run, tests were carried out to check whether an alignment of the conductivity sensor was necessary. No lag was observed. Details of the routines and settings used were as follows:

    DATCNV converts the raw data into engineering units. Both down and upcasts were selected. All channels were selected for transfer.

    The manufacturer's calibration for the fluorometer was applied during Sea-Bird processing as follows:

    Nominal chl-a conc (µg/l) = (0.009 * 10voltage) - 0.016

    CELLTM was run on the DATCNV output using SeaBird's recommended settings of alpha= 0.03 and Tau=7.

    FILTER was run on pressure using a low pass time constant of 0.15 seconds.

    LOOPEDIT was run in order to minimise the marked wake effect linked to ship rolling observed on recent cruises.

    DERIVE, BINAVG and STRIP were then run to derive the salinity and oxygen concentration, reduce the data to 2Hz and strip redundant channels from the final sets of ASCII files.

    Conversion of transmissometer voltages to beam attenuation

    There were no air and blocked path readings provided for this cruise. So the transmissometer output was not processed to transmissance or attenuance during SeaBird processing but retained as a voltage. The conversion to attenuance was carried out after transfer, screening and loading to the database.

    Conversion of PAR sensor voltages to irradiance

    The PAR sensor output was not processed to irradiance units during SeaBird processing but retained as a voltage. The conversion to irradiance was carried out after transfer, screening and loading to the database.

  • Reformatting

    The data were converted from Sea-Bird ASCII format into BODC internal format (PXF) using BODC transfer function 357. The following table shows how the variables within the Sea-Bird files were mapped to appropriate BODC parameter codes:

    Sea-Bird Parameter Name Units Description BODC Parameter Code Units Comments
    Pressure, Digiquartz dbar CTD pressure PRESPR01 dbar -
    Temperature [ITS-90] °C Temperature of water column by CTD sensor 1 TEMPCU01 °C -
    Temperature, 2 [ITS-90] °C Temperature of water column by CTD sensor 2 TEMPCU02 °C -
    Salinity - Practical salinity of the water body by CTD sensor 1 PSALCU01 - -
    Salinity, 2 - Practical salinity of the water body by CTD sensor 2 PSALCU02 - -
    Oxygen µmol kg-1 Dissolved oxygen concentration DOXYSU01 µmol l-1 Converted from µmol kg-1 to µmol l-1 using sigma-T during transfer
    Fluorescence mg m-3 Nominal chl-a concentration CPHLPM01 mg m-3 Manufacturer's calibration applied during processing
    Voltage 4 V Downwelling PAR sensor voltage LVLTPD01 V -
    Voltage 5 V Upwelling PAR sensor voltage LVLTPU01 V -
    Voltage 6 V Light Back-Scattering Sensor voltage NVLTST01 V No calibration details - only available as raw voltage
    Voltage 7 V Transmissometer voltage TVLTDR01 V -
    - - Practical salinity of the water body by CTD sensor 1 - sample calibrated PSALCC01 - PSALCU01 calibrated against bench salinometer data
    - - Practical salinity of the water body by CTD sensor 2 - sample calibrated PSALCC02 - PSALCU02 calibrated against bench salinometer data
    - - Dissolved oxygen concentration - sample calibrated DOXYSC01 µmol l-1 DOXYSU01 calibrated against Winkler titration data
    - - Fluorometer - sample calibrated CPHLPS01 mg m-3 CPHLPM01 calibrated against fluorometric chlorophyll-a data
    - - Downwelling sub-surface PAR irradiance IRRDPP01 µE m-2 s-1 Generated using manufacturer's calibration
    - - Upwelling sub-surface PAR irradiance IRRUPP01 µE m-2 s-1 Generated using manufacturer's calibration
    - - Beam attenuance ATTNDR01 m-1 Generated using manufacturer's calibration
    - - Oxygen saturation OXYSSC01 % Generated by BODC using the Benson and Krause (1984) algorithm wioth parameters DOXYSC01, PSALCC01 and TEMPCU01
    - - Potential temperature POTMCV01 °C Generated by BODC using UNESCO Report 38 (1981) algorithm with parameters PRESPR01, PSALCC01 and TEMPCU01
    - - Sigma-theta SIGTPR02 kg m-3 Generated by BODC using the Fofonoff and Millard (1982) algorithm with parameters PSALCC02 and POTMCV02
    - - Potential temperature POTMCV02 °C Only for cast A13_04. Generated by BODC using UNESCO Report 38 (1981) algorithm with parameters PRESPR01, PSALCC02 and TEMPCU02
    - - Sigma-theta SIGTPR01 kg m-3 Only for cast A13_04. Generated by BODC using the Fofonoff and Millard (1982) algorithm with parameters PSALCC01 and POTMCV01
  • References

    Benson, B.B. and Krause, D., 1984. The concentration and isotopic fractionation of oxygen dissolved in freshwater and seawater in equilibrium with the atmosphere. Limnol. Oceanogr., 29(3), 620-632

    Fofonoff, N.P. and Millard, R.C., 1983. Algorithms for computations of fundamental properties of seawater. UNESCO Technical Papers in Marine Science No. 44, 53pp.

    UNESCO, 1981. Background papers and supporting data on the International Equation of State of Seawater 1980. UNESCO Technical Papers in Marine Science No. 38, 192pp

  • Screening

    The PXF data were compared with the original data files to ensure that no errors had been introduced during the conversion process. Reformatted CTD data were transferred onto a graphics work station for visualisation using the in-house editor EDSERPLO. Downcasts and upcasts were differentiated and the limits manually flagged. No data values were edited or deleted. Flagging was achieved by modification of the associated BODC quality control flag for suspect or null values.

    As experienced in AMT12, the transmissometer malfunctioned in high temperatures and produced poor data. The casts affected were from 31 to 54.

    The dissolved oxygen data for AMT13_45 were suspect - this has been excluded from the final data set.

    The primary temperature (TEMPCU01) and salinity (PSALCU01) channels were suspect for the whole profile of cast 04. Dissolved oxygen (DOXYSU01) and oxygen saturation (OXYSSC01) were also suspect for this cast.

  • Banking

    Once quality control screening was complete, the CTD downcasts were banked. Finally, the data were binned against pressure at 1 dbar increments with flagged data excluded from the bin averaging. The primary salinity, temperature, density and potential temperature channels were retained as the best quality data channels from the two sensors, except for casts A13_04 and A13_45 where the secondary channels were the best quality data channels. In the absence of calibration coefficients the LBSS voltages were not banked but are available on request from the archived full parameter set series.

Voltage conversions

  • PAR sub-surface irradiance

    The PAR sensor raw voltages have been converted to PAR irradiance values in units of µE m-2 s-1 using supplied manufacturer's calibration coefficients.

    Sensor s/n Calibration BODC cal ref
    08 IRRDPP01 = 0.0423 * exp (LVLTDP01 * 5.125 - 7.557) 3293
    12 IRRUPP01 = 0.0423 * exp (LVLTUP01 * 5.091 - 8.879) 3143
  • Attenuance

    The transmissometer raw voltages have been converted to attenuance values in units of m-1 using manufacturer air/dark/pure water voltages converted to calibration coefficients as per Sea-Bird Application Note No.7. No air/dark voltages were provided from the cruise so coefficients have been calculated with the most recent dark/air voltages being those provided by the manufacturer.

    M = (Tw / (W0 - Y0) * (A0 - Y0) / (A1 - Y1)
    B = -M * Y1

    where

    Stainless steel
    Tw = % transmission for pure water 100%
    W0 = voltage output in pure water 4.2009 V
    A0 = manufacturer's air voltage 4.7810 V
    Y0 = manufacturer's blocked path voltage 0.0184 V
    A1 = cruise air voltage not available - used A0
    Y1 = cruise blocked path voltage not available - used Y0
    Sensor s/n Calibration BODC cal ref
    161-2642-03 ATTNDR01 = -1 / 0.25 * ln (TVLTDR01 * 0.23909 - 0.004399) 3343

Field Calibrations

  • Pressure

    The pressure sensor has been calibrated at BODC against pressures reading in air.

    Casts Calibration BODC cal ref
    All PRESPR01calibrated = PRESPR01raw - 0.517 2983
  • Temperature

    No reversing thermometer data were available for AMT13, so the CTD sensor data have not been calibrated against another dataset. Temperature readings from the two temperature sensors were almost identical and no other independent measurements of better quality were available. No further correction was therefore applied to the data.

  • Salinity

    Bench salinometer data were provided by UKORS. Some analyses were carried out on-board, but some problems were encountered with the instrument. As a result, the remaining samples were sent to SOC and analysed after the cruise.

    The salinometer data were compared with CTD values from primary and secondary sensors on the upcast at the time of bottle firing. Analysis of the data showed that the samples measured on-board produced less consistent relationships with the CTD sensor data. Although only 10 samples were available from the post-cruise sample analysis, it was decided to calibrate the sensors using these samples only. This produced the following calibrations which have been applied to the CTD data.

    Casts Calibration N R2 BODC cal ref
    All PSALCC01 = 0.998289 * PSALCU01 + 0.0517 10 1.0 3163
    All PSALCU02 = 1.000660 * PSALCU02 - 0.0236 10 1.0 3164
  • Dissolved oxygen

    The oxygen sensor calibrations have been carried out using dissolved oxygen data from Winkler titrations (provided by Nikki Gist, Plymouth Marine Laboratory). Examination of the calibration data set showed a clear problem with the sensor of drift throughout the cruise. The change of sensor on casts A13_55 and A13_56 shows the poor accuracy of the SBE45 s/n 0013 during the cruise. Since the drift was so pronounced and where the Winkler titration dataset provided a good number of samples from each day the sensor was calibrated on a daily basis. This corrected for much of the observed drift.

    Casts A13_03, A13_04, A13_07, A13_09 to A13_12, A13_42 and A13_76 to A13_78 have not had a calibration applied to the oxygen sensor data.

    Casts Calibration N R2 BODC cal ref
    A13_01 to A13_02 DOXYSC01 = 1.6072 * DOXYSU01 - 0.2311 9 0.948 6603
    A13_05 to A13_06 DOXYSC01 = DOXYSU01 + 86.7859 (sd =1.7531) 19 0.143 6604
    A13_08 DOXYSC01 = 2.2852 * DOXYSU01 - 118.9077 11 0.679 6605
    A13_13 DOXYSC01 = 1.2621 * DOXYSU01 + 42.4397 7 0.697 6606
    A13_14 to A13_16 DOXYSC01 = 1.6872 * DOXYSU01 - 23.668 10 0.893 6607
    A13_17 to A13_19 DOXYSC01 = 1.7969 * DOXYSU01 - 34.8284 17 0.788 6608
    A13_20 to A13_22 DOXYSC01 = 1.9873 * DOXYSU01 - 59.5409 8 0.910 6609
    A13_23 to A13_25 DOXYSC01 = 1.8179 * DOXYSU01 - 26.6879 10 0.992 6610
    A13_26 to A13_28 DOXYSC01 = 1.6584 * DOXYSU01 - 5.162 10 0.996 6611
    A13_29 to A13_31 DOXYSC01 = 1.6966 * DOXYSU01 - 2.5775 9 0.997 6612
    A13_32 DOXYSC01 = 1.7652 * DOXYSU01 + 0.0738 7 0.998 6613
    A13_33 to A13_35 DOXYSC01 = 1.9091 * DOXYSU01 - 8.7512 15 0.998 6614
    A13_36 to A13_38 DOXYSC01 = 2.1160 * DOXYSU01 - 19.7753 10 0.995 6615
    A13_39 to A13_41 DOXYSC01 = 2.1668 * DOXYSU01 - 12.4199 9 0.997 6616
    A13_43 to A13_45 DOXYSC01 = 2.3764 * DOXYSU01 - 12.4672 9 1.000 6617
    A13_46 to A13_48 DOXYSC01 = 2.4820 * DOXYSU01 - 15.9933 10 0.997 6618
    A13_49 to A13_51 DOXYSC01 = 3.0012 * DOXYSU01 - 48.0372 10 0.994 6619
    A13_52 to A13_54 DOXYSC01 = 3.5361 * DOXYSU01 - 83.7659 10 0.994 6620
    A13_55 to A13_56 DOXYSC01 = DOXYSU01 + 51.56 (±2.17) 9 0.086 6621
    A13_57 DOXYSC01 = 3.9667 * DOXYSU01 - 118.2785 5 0.992 6622
    A13_58 to A13_60 DOXYSC01 = 4.8638 * DOXYSU01 - 202.1352 10 0.992 6623
    A13_61 to A13_63 DOXYSC01 = 4.4150 * DOXYSU01 - 166.8256 9 0.985 6624
    A13_64 to A13_66 DOXYSC01 = 3.3921 * DOXYSU01 - 63.6431 10 0.976 6625
    A13_67 to A13_69 DOXYSC01 = 3.1397 * DOXYSU01 - 42.9451 15 0.995 6626
    A13_70 to A13_72 DOXYSC01 = 2.8050 * DOXYSU01 - 11.0328 10 0.959 6627
    A13_73 to A13_75 DOXYSC01 = 2.9869 * DOXYSU01 - 25.5102 14 0.990 6628
  • Fluorescence

    The nominal chlorophyll-a values have been calculated from the fluorometer data (with manufacturer's calibration applied) from the up-cast at bottle firing and the fluorometric chlorophyll-a data from sampled bottles. Where samples were not supplied or too few to generate a calibration and could not be grouped with other casts, the fluorometer profiles have not been calibrated. The sampling strategy for the extracted chlorophyll-a dataset used to calibrate the fluorometer focused on the upper water column, therefore the calibration is biased towards these depths. The calibration may not be as reliable below depths ~150m. The extracted chlorophyll-a dataset is available for users to derive their own calibrations should they wish.

    Casts Calibration N R2 BODC cal ref
    A13_02 to A13_22 CPHLPS01 = 1.4120 * CPHLPM01 52 0.196 6673
    A13_24 to A13_41 CPHLPS01 = 1.9320 * CPHLPM01 50 0.578 6674
    A13_42 to A13_66 CPHLPS01 = 1.7059 * CPHLPM01 83 0.774 6675
    A13_68 to A13_69 CPHLPS01 = 1.6722 * CPHLPM01 10 0.809 6676
    A13_71 to A13_72 CPHLPS01 = 1.8222 * CPHLPM01 10 0.761 6677
    A13_74 to A13_75 CPHLPS01 = 1.9845 * CPHLPM01 8 0.873 6678
    A13_76 to A13_77 CPHLPS01 = 1.5654 * CPHLPM01 5 0.608 6679

Project Information

The Atlantic Meridional Transect - Phase 2 (2002-2006)

Who was involved in the project?

The Atlantic Meridional Transect Phase 2 was designed by and implemented by a number of UK research centres and universities. The programme was hosted by Plymouth Marine Laboratory in collaboration with the National Oceanography Centre, Southampton. The universities involved were:

  • University of Liverpool
  • University of Newcastle
  • University of Plymouth
  • University of Southampton
  • University of East Anglia

What was the project about?

AMT began in 1995, with scientific aims to assess mesoscale to basin scale phytoplankton processes, the functional interpretation of bio-optical signatures and the seasonal, regional and latitudinal variations in mesozooplankton dynamics. In 2002, when the programme restarted, the scientific aims were broadened to address a suite of cross-disciplinary questions concerning ocean plankton ecology and biogeochemistry and the links to atmospheric processes.

The objectives included the determination of:

  • how the structure, functional properties and trophic status of the major planktonic ecosystems vary in space and time
  • how physical processes control the rates of nutrient supply to the planktonic ecosystem
  • how atmosphere-ocean exchange and photo-degradation influence the formation and fate of organic matter

The data were collected with the aim of being distributed for use in the development of models to describe the interactions between the global climate system and ocean biogeochemistry.

When was the project active?

The second phase of funding allowed the project to continue for the period 2002 to 2006 and consisted of six research cruises. The first phase of the AMT programme ran from 1995 to 2000.

Brief summary of the project fieldwork/data

The fieldwork on the first three cruises was carried out along transects from the UK to the Falkland Islands in September and from the Falkland Islands to the UK in April. The last three cruises followed a cruise track between the UK and South Africa, only deviating from the traditional transect in the southern hemisphere. During this phase the research cruises sampled further into the centre of the North and South Atlantic Ocean and also along the north-west coast of Africa where upwelled nutrient rich water is known to provide a significant source of climatically important gases.

Who funded the project?

Natural Environment Research Council (NERC)


Data Activity or Cruise Information

Cruise

Cruise Name JR20030910 (AMT13, JR91)
Departure Date 2003-09-10
Arrival Date 2003-10-14
Principal Scientist(s)Carol Robinson (Plymouth Marine Laboratory)
Ship RRS James Clark Ross

Complete Cruise Metadata Report is available here


Fixed Station Information


No Fixed Station Information held for the Series


BODC Quality Control Flags

The following single character qualifying flags may be associated with one or more individual parameters with a data cycle:

Flag Description
Blank Unqualified
< Below detection limit
> In excess of quoted value
A Taxonomic flag for affinis (aff.)
B Beginning of CTD Down/Up Cast
C Taxonomic flag for confer (cf.)
D Thermometric depth
E End of CTD Down/Up Cast
G Non-taxonomic biological characteristic uncertainty
H Extrapolated value
I Taxonomic flag for single species (sp.)
K Improbable value - unknown quality control source
L Improbable value - originator's quality control
M Improbable value - BODC quality control
N Null value
O Improbable value - user quality control
P Trace/calm
Q Indeterminate
R Replacement value
S Estimated value
T Interpolated value
U Uncalibrated
W Control value
X Excessive difference

SeaDataNet Quality Control Flags

The following single character qualifying flags may be associated with one or more individual parameters with a data cycle:

Flag Description
0 no quality control
1 good value
2 probably good value
3 probably bad value
4 bad value
5 changed value
6 value below detection
7 value in excess
8 interpolated value
9 missing value
A value phenomenon uncertain
B nominal value
Q value below limit of quantification