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Metadata Report for BODC Series Reference Number 1899810


Metadata Summary

Data Description

Data Category CTD or STD cast
Instrument Type
NameCategories
Sea-Bird SBE 43 Dissolved Oxygen Sensor  dissolved gas sensors
Chelsea Technologies Group Aquatracka fluorometer  fluorometers
Sea-Bird SBE 911plus CTD  CTD; water temperature sensor; salinity sensor
Sea-Bird SBE 3plus (SBE 3P) temperature sensor  water temperature sensor
Sea-Bird SBE 4C conductivity sensor  salinity sensor
Paroscientific Digiquartz depth sensors  water pressure sensors
Instrument Mounting lowered unmanned submersible
Originating Country United Kingdom
Originator Dr Steph Henson
Originating Organization National Oceanography Centre, Southampton
Processing Status banked
Online delivery of data Download available - Ocean Data View (ODV) format
Project(s) COMICS
 

Data Identifiers

Originator's Identifier DY086_CTD025
BODC Series Reference 1899810
 

Time Co-ordinates(UT)

Start Time (yyyy-mm-dd hh:mm) 2017-12-06 07:01
End Time (yyyy-mm-dd hh:mm) -
Nominal Cycle Interval 2.0 decibars
 

Spatial Co-ordinates

Latitude 53.04167 S ( 53° 2.5' S )
Longitude 41.96167 W ( 41° 57.7' W )
Positional Uncertainty Unspecified
Minimum Sensor or Sampling Depth 3.0 m
Maximum Sensor or Sampling Depth 153.0 m
Minimum Sensor or Sampling Height 2413.0 m
Maximum Sensor or Sampling Height 2563.0 m
Sea Floor Depth 2566.0 m
Sea Floor Depth Source SCILOG
Sensor or Sampling Distribution Variable common depth - All sensors are grouped effectively at the same depth, but this depth varies significantly during the series
Sensor or Sampling Depth Datum Instantaneous - Depth measured below water line or instantaneous water body surface
Sea Floor Depth Datum Instantaneous - Depth measured below water line or instantaneous water body surface
 

Parameters

BODC CODERankUnitsTitle
ACYCAA011DimensionlessSequence number
CPHLPS011Milligrams per cubic metreConcentration of chlorophyll-a {chl-a CAS 479-61-8} per unit volume of the water body [particulate >unknown phase] by in-situ chlorophyll fluorometer and calibration against sample data
DOXYZZ011Micromoles per litreConcentration of oxygen {O2 CAS 7782-44-7} per unit volume of the water body [dissolved plus reactive particulate phase] by in-situ sensor
OXYSZZ011PercentSaturation of oxygen {O2 CAS 7782-44-7} in the water body [dissolved plus reactive particulate phase]
POTMCV011Degrees CelsiusPotential temperature of the water body by computation using UNESCO 1983 algorithm
PRESPR011DecibarsPressure (spatial coordinate) exerted by the water body by profiling pressure sensor and correction to read zero at sea level
PSALST011DimensionlessPractical salinity of the water body by CTD and computation using UNESCO 1983 algorithm
SIGTPR011Kilograms per cubic metreSigma-theta of the water body by CTD and computation from salinity and potential temperature using UNESCO algorithm
TEMPST011Degrees CelsiusTemperature of the water body by CTD or STD
TOKGPR011Litres per kilogramConversion factor (volume to mass) for the water body by CTD and computation of density (in-situ potential temperature surface pressure) reciprocal from pressure, temperature and salinity

Definition of Rank

  • Rank 1 is a one-dimensional parameter
  • Rank 2 is a two-dimensional parameter
  • Rank 0 is a one-dimensional parameter describing the second dimension of a two-dimensional parameter (e.g. bin depths for moored ADCP data)

Problem Reports

No Problem Report Found in the Database


Data Access Policy

Open Data supplied by Natural Environment Research Council (NERC)

You must always use the following attribution statement to acknowledge the source of the information: "Contains data supplied by Natural Environment Research Council."


Narrative Documents

Sea-Bird Dissolved Oxygen Sensor SBE 43 and SBE 43F

The SBE 43 is a dissolved oxygen sensor designed for marine applications. It incorporates a high-performance Clark polarographic membrane with a pump that continuously plumbs water through it, preventing algal growth and the development of anoxic conditions when the sensor is taking measurements.

Two configurations are available: SBE 43 produces a voltage output and can be incorporated with any Sea-Bird CTD that accepts input from a 0-5 volt auxiliary sensor, while the SBE 43F produces a frequency output and can be integrated with an SBE 52-MP (Moored Profiler CTD) or used for OEM applications. The specifications below are common to both.

Specifications

Housing Plastic or titanium
Membrane

0.5 mil- fast response, typical for profile applications

1 mil- slower response, typical for moored applications

Depth rating

600 m (plastic) or 7000 m (titanium)

10500 m titanium housing available on request

Measurement range 120% of surface saturation
Initial accuracy 2% of saturation
Typical stability 0.5% per 1000 h

Further details can be found in the manufacturer's specification sheet.

RRS Discovery Cruise DY086 CTD: Instrumentation

CTD Unit and Auxillary Sensors

A Sea-Bird 911plus CTD system was used for 25 of 33 CTD casts on cruise DY086. This was mounted on a 24-way stainless steel rosette frame, equipped with 24 x 20 litre OTE Niskin bottles. The CTD was fitted with the following scientific sensors:

Sensor Serial Number Last calibration date Comments
Sea-Bird SBE 3Plus temperature sensor 4712 30th August 2016 -
Sea-Bird SBE 4C conductivity sensor 2858 22nd July 2016 -
Paroscientific Digiquartz with TC depth sensor 110557 3rd November 2016 -
Sea-Bird SBE 3Plus temperature sensor 4116 22nd July 2016 -
Sea-Bird SBE 4C conductivity sensor 3768 22nd March 2016 -
Sea-Bird SBE 43 dissolved oxygen sensor 1882 28th February 2017 -
Altimeter 59494 - -
WETLabs ECO-BB OBS Scattering Meter 169 9th August 2016 -
Biospherical LICOR PAR/Irradiance 70520 24th January 2017 -
Biospherical LICOR PAR/Irradiance 70510 24th January 2017 -
WETLabs C-Star Transmissometer 1602DR 24th May 2016 -
Chelsea Aquatracka MKIII fluorometer 88-2615-126 22nd July 2016 -

The Data Originator provided BODC with the best data for temperature and salinity.

Sea-Bird Electronics SBE 911 and SBE 917 series CTD profilers

The SBE 911 and SBE 917 series of conductivity-temperature-depth (CTD) units are used to collect hydrographic profiles, including temperature, conductivity and pressure as standard. Each profiler consists of an underwater unit and deck unit or SEARAM. Auxiliary sensors, such as fluorometers, dissolved oxygen sensors and transmissometers, and carousel water samplers are commonly added to the underwater unit.

Underwater unit

The CTD underwater unit (SBE 9 or SBE 9 plus) comprises a protective cage (usually with a carousel water sampler), including a main pressure housing containing power supplies, acquisition electronics, telemetry circuitry, and a suite of modular sensors. The original SBE 9 incorporated Sea-Bird's standard modular SBE 3 temperature sensor and SBE 4 conductivity sensor, and a Paroscientific Digiquartz pressure sensor. The conductivity cell was connected to a pump-fed plastic tubing circuit that could include auxiliary sensors. Each SBE 9 unit was custom built to individual specification. The SBE 9 was replaced in 1997 by an off-the-shelf version, termed the SBE 9 plus, that incorporated the SBE 3 plus (or SBE 3P) temperature sensor, SBE 4C conductivity sensor and a Paroscientific Digiquartz pressure sensor. Sensors could be connected to a pump-fed plastic tubing circuit or stand-alone.

Temperature, conductivity and pressure sensors

The conductivity, temperature, and pressure sensors supplied with Sea-Bird CTD systems have outputs in the form of variable frequencies, which are measured using high-speed parallel counters. The resulting count totals are converted to numeric representations of the original frequencies, which bear a direct relationship to temperature, conductivity or pressure. Sampling frequencies for these sensors are typically set at 24 Hz.

The temperature sensing element is a glass-coated thermistor bead, pressure-protected inside a stainless steel tube, while the conductivity sensing element is a cylindrical, flow-through, borosilicate glass cell with three internal platinum electrodes. Thermistor resistance or conductivity cell resistance, respectively, is the controlling element in an optimized Wien Bridge oscillator circuit, which produces a frequency output that can be converted to a temperature or conductivity reading. These sensors are available with depth ratings of 6800 m (aluminium housing) or 10500 m (titanium housing). The Paroscientific Digiquartz pressure sensor comprises a quartz crystal resonator that responds to pressure-induced stress, and temperature is measured for thermal compensation of the calculated pressure.

Additional sensors

Optional sensors for dissolved oxygen, pH, light transmission, fluorescence and others do not require the very high levels of resolution needed in the primary CTD channels, nor do these sensors generally offer variable frequency outputs. Accordingly, signals from the auxiliary sensors are acquired using a conventional voltage-input multiplexed A/D converter (optional). Some Sea-Bird CTDs use a strain gauge pressure sensor (Senso-Metrics) in which case their pressure output data is in the same form as that from the auxiliary sensors as described above.

Deck unit or SEARAM

Each underwater unit is connected to a power supply and data logging system: the SBE 11 (or SBE 11 plus) deck unit allows real-time interfacing between the deck and the underwater unit via a conductive wire, while the submersible SBE 17 (or SBE 17 plus) SEARAM plugs directly into the underwater unit and data are downloaded on recovery of the CTD. The combination of SBE 9 and SBE 17 or SBE 11 are termed SBE 917 or SBE 911, respectively, while the combinations of SBE 9 plus and SBE 17 plus or SBE 11 plus are termed SBE 917 plus or SBE 911 plus.

Specifications

Specifications for the SBE 9 plus underwater unit are listed below:

Parameter Range Initial accuracy Resolution at 24 Hz Response time
Temperature -5 to 35°C 0.001°C 0.0002°C 0.065 sec
Conductivity 0 to 7 S m-1 0.0003 S m-1 0.00004 S m-1 0.065 sec (pumped)
Pressure 0 to full scale (1400, 2000, 4200, 6800 or 10500 m) 0.015% of full scale 0.001% of full scale 0.015 sec

Further details can be found in the manufacturer's specification sheet.

Aquatracka fluorometer

The Chelsea Instruments Aquatracka is a logarithmic response fluorometer. It uses a pulsed (5.5 Hz) xenon light source discharging between 320 and 800 nm through a blue filter with a peak transmission of 420 nm and a bandwidth at half maximum of 100 nm. A red filter with sharp cut off, 10% transmission at 664 nm and 678 nm, is used to pass chlorophyll-a fluorescence to the sample photodiode.

The instrument may be deployed either in a through-flow tank, on a CTD frame or moored with a data logging package.

Further details can be found in the manufacturer's specification sheet.

RRS Discovery Cruise DY086 CTD Data: BODC Processing

BODC Processing

The CTD data was processed following BODC recommended guidelines, and the processed data was supplied to BODC in an excel spreadsheet with each cast on a different tab. The data were then reformatted to BODC internal NetCDF file format using established procedures.

The Data Originator provided BODC with the best data for temperature and salinity. Originator variables were mapped to appropriate BODC parameter codes for standardisation, and can be seen in the table below:

Originator's variable Units BODC Code Units Comments
Pressure decibars PRESPR01 decibars -
Temperature degC TEMPST01 degC -
Oxygen µmol/kg DOXYZZ01 µmol/l Conversion by BODC to µmol/l using TOKGPR01
Chlorophyll mg/m3 CPHLPS01 mg/m3 -
Salinity pss-78 PSALST01 dimensionless Calculated from calibrated conductivity measurements by the originator
- - OXYSZZ01 % Derived by BODC using DOXYSC01, TEMPST01 and PSALST01
- - POTMCV01 °C Derived by BODC using TEMPST01, PSALST01 and PRESPR01.
- - SIGTPR01 kg/m3 Derived by BODC using POTMCV01, PSALST01 and PRESPR01
- - TOKGPR01 l/kg1 Derived by BODC using SIGTPR01

Following transfer, the data were screened using BODC in-house visualisation software. Suspect data values were assigned the appropriate BODC data quality flag.

The parameter mapping is the same for both the titanium and stainless steel CTDs. The titanium CTD was used during casts 1, 4, 7, 15, 19, 24, 26, and 29.

RRS Discovery Cruise DY086 CTD Data: Originator's Processing

Sampling Strategy

A total of 33 CTD casts were completed during the cruise. The cruise departed the Falkland Islands on November 12, 2017 and returned to the same port on December 19, 2017. Data was collected using a stainless steel CTD with 24 x 20L OTE Niskin bottles for 25 casts, and a titanium CTD with 24 x 10L OTE Niskin bottles for the other 8 casts (casts 1, 4, 7, 15, 19, 24, 26, and 29). For further information on the CTD sampling strategy, please refer to the cruise report.

Originator's Processing

The CTD data was processed following BODC recommended guidelines using standard SBE Data Processing software.


Project Information

Controls over Ocean Mesopelagic Interior Carbon Storage: COMICS

COMICS is a four-year collaborative research project that aims to quantify the flow of carbon in the ocean?s ?twilight? zone in order to accurately model global climate change. This ?twilight? zone is the part of the ocean between 100m and 1000m below the sea surface, where only a small amount of light from the sun can still penetrate.

By investigating carbon dynamics in the ocean interior, COMICS will help to improve predictions of future global climate change.

The COMICS project is led by the National Oceanography Centre and is a collaboration between the British Antarctic Survey and the universities of Queen Mary London, Liverpool, Oxford and Southampton. The project received funding from the Natural Environmental Research Council and runs between April 2017 and 2021.


Data Activity or Cruise Information

Cruise

Cruise Name DY086 (COMICS)
Departure Date 2017-11-12
Arrival Date 2017-12-19
Principal Scientist(s)Richard Sanders (National Oceanography Centre, Southampton)
Ship RRS Discovery

Complete Cruise Metadata Report is available here


Fixed Station Information


No Fixed Station Information held for the Series


BODC Quality Control Flags

The following single character qualifying flags may be associated with one or more individual parameters with a data cycle:

Flag Description
Blank Unqualified
< Below detection limit
> In excess of quoted value
A Taxonomic flag for affinis (aff.)
B Beginning of CTD Down/Up Cast
C Taxonomic flag for confer (cf.)
D Thermometric depth
E End of CTD Down/Up Cast
G Non-taxonomic biological characteristic uncertainty
H Extrapolated value
I Taxonomic flag for single species (sp.)
K Improbable value - unknown quality control source
L Improbable value - originator's quality control
M Improbable value - BODC quality control
N Null value
O Improbable value - user quality control
P Trace/calm
Q Indeterminate
R Replacement value
S Estimated value
T Interpolated value
U Uncalibrated
W Control value
X Excessive difference

SeaDataNet Quality Control Flags

The following single character qualifying flags may be associated with one or more individual parameters with a data cycle:

Flag Description
0 no quality control
1 good value
2 probably good value
3 probably bad value
4 bad value
5 changed value
6 value below detection
7 value in excess
8 interpolated value
9 missing value
A value phenomenon uncertain
B nominal value
Q value below limit of quantification