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Metadata Report for BODC Series Reference Number 1975199


Metadata Summary

Data Description

Data Category Water sample data
Instrument Type
NameCategories
Niskin bottle  discrete water samplers
Thermo Finnigan EA 1112 Flash Elemental Analyser  elemental analysers
Instrument Mounting lowered unmanned submersible
Originating Country United Kingdom
Originator Dr Eric Achterberg
Originating Organization University of Southampton School of Ocean and Earth Science
Processing Status banked
Online delivery of data Download available - Ocean Data View (ODV) format
Project(s) Fe biogeochem in high lat N Atlantic
 

Data Identifiers

Originator's Identifier D354_CTD_PCPN_532:CTD_S_033
BODC Series Reference 1975199
 

Time Co-ordinates(UT)

Start Time (yyyy-mm-dd hh:mm) 2010-08-04 04:52
End Time (yyyy-mm-dd hh:mm) -
Nominal Cycle Interval -
 

Spatial Co-ordinates

Latitude 61.26010 N ( 61° 15.6' N )
Longitude 20.70750 W ( 20° 42.5' W )
Positional Uncertainty 0.05 to 0.1 n.miles
Minimum Sensor or Sampling Depth 6.5 m
Maximum Sensor or Sampling Depth 2201.5 m
Minimum Sensor or Sampling Height 30.5 m
Maximum Sensor or Sampling Height 2225.5 m
Sea Floor Depth 2232.0 m
Sea Floor Depth Source SCILOG
Sensor or Sampling Distribution Unspecified -
Sensor or Sampling Depth Datum Unspecified -
Sea Floor Depth Datum Unspecified -
 

Parameters

BODC CODERankUnitsTitle
ADEPZZ011MetresDepth (spatial coordinate) relative to water surface in the water body
BOTTFLAG1Not applicableSampling process quality flag (BODC C22)
CORGCNP11Micromoles per litreConcentration of total carbon {total_C CAS 7440-44-0} {POC} per unit volume of the water body [particulate >GF/F phase] by filtration, no acidification and elemental analysis
FIRSEQID1DimensionlessBottle firing sequence number
NTOTCNP11Micromoles per litreConcentration of total nitrogen {total_N} {PON} per unit volume of the water body [particulate >GF/F phase] by filtration and elemental analysis
ROSPOSID1DimensionlessBottle rosette position identifier
SAMPRFNM1DimensionlessSample reference number

Definition of BOTTFLAG

BOTTFLAGDefinition
0The sampling event occurred without any incident being reported to BODC.
1The filter in an in-situ sampling pump physically ruptured during sample resulting in an unquantifiable loss of sampled material.
2Analytical evidence (e.g. surface water salinity measured on a sample collected at depth) indicates that the water sample has been contaminated by water from depths other than the depths of sampling.
3The feedback indicator on the deck unit reported that the bottle closure command had failed. General Oceanics deck units used on NERC vessels in the 80s and 90s were renowned for reporting misfires when the bottle had been closed. This flag is also suitable for when a trigger command is mistakenly sent to a bottle that has previously been fired.
4During the sampling deployment the bottle was fired in an order other than incrementing rosette position. Indicative of the potential for errors in the assignment of bottle firing depth, especially with General Oceanics rosettes.
5Water was reported to be escaping from the bottle as the rosette was being recovered.
6The bottle seals were observed to be incorrectly seated and the bottle was only part full of water on recovery.
7Either the bottle was found to contain no sample on recovery or there was no bottle fitted to the rosette position fired (but SBE35 record may exist).
8There is reason to doubt the accuracy of the sampling depth associated with the sample.
9The bottle air vent had not been closed prior to deployment giving rise to a risk of sample contamination through leakage.

Definition of Rank

  • Rank 1 is a one-dimensional parameter
  • Rank 2 is a two-dimensional parameter
  • Rank 0 is a one-dimensional parameter describing the second dimension of a two-dimensional parameter (e.g. bin depths for moored ADCP data)

Problem Reports

No Problem Report Found in the Database


Data Access Policy

Open Data supplied by Natural Environment Research Council (NERC)

You must always use the following attribution statement to acknowledge the source of the information: "Contains data supplied by Natural Environment Research Council."


Narrative Documents

ThermoFinnigan EA 1112 Flash Elemental Analyser

The ThermoFinnigan EA 1112 Flash Elemental Analyser is designed to determine total carbon, hydrogen, nitrogen, sulphur and oxygen in a sample. The sample is completely and instantaneously oxidised by flash combustion, which converts all organic and inorganic substances into combustion products. The resulting combustion gases pass through a reduction furnace and are swept into the chromatographic column by the helium carrier gas. The gases are separated in the column and detected by the thermal conductivity detector which gives an output signal proportional to the concentration of the individual components of the mixture.

ThermoFinnigan is part of the Thermo Fisher Scientific group.

Further details can be found in the manufacturer's specification sheet.

Niskin Bottle

The Niskin bottle is a device used by oceanographers to collect subsurface seawater samples. It is a plastic bottle with caps and rubber seals at each end and is deployed with the caps held open, allowing free-flushing of the bottle as it moves through the water column.

Standard Niskin

The standard version of the bottle includes a plastic-coated metal spring or elastic cord running through the interior of the bottle that joins the two caps, and the caps are held open against the spring by plastic lanyards. When the bottle reaches the desired depth the lanyards are released by a pressure-actuated switch, command signal or messenger weight and the caps are forced shut and sealed, trapping the seawater sample.

Lever Action Niskin

The Lever Action Niskin Bottle differs from the standard version, in that the caps are held open during deployment by externally mounted stainless steel springs rather than an internal spring or cord. Lever Action Niskins are recommended for applications where a completely clear sample chamber is critical or for use in deep cold water.

Clean Sampling

A modified version of the standard Niskin bottle has been developed for clean sampling. This is teflon-coated and uses a latex cord to close the caps rather than a metal spring. The clean version of the Levered Action Niskin bottle is also teflon-coated and uses epoxy covered springs in place of the stainless steel springs. These bottles are specifically designed to minimise metal contamination when sampling trace metals.

Deployment

Bottles may be deployed singly clamped to a wire or in groups of up to 48 on a rosette. Standard bottles and Lever Action bottles have a capacity between 1.7 and 30 L. Reversing thermometers may be attached to a spring-loaded disk that rotates through 180° on bottle closure.

IBIS cruise D354 CTD Chl-a, POC/N, PIC and BSi sampling document

Originator's data acquisition and analysis

Each stainless steel CTD cast was sampled by taking water from the top six depths of the euphotic layer (surface to approx 50m). The sample water was drawn into 20L black carboys to filter for pigments (chl-a), particulate organic carbon/nitrogen and inorganic carbon (POC/N, PIC), and biogenic silica. (BSi).

For chl-a, 250ml seawater was filtered onto Whatman GF/F filters that were then placed in 8ml 90 percent acetone for 24hrs in a dark 4°C CT room for pigment extraction. For the >5µm fraction, phytoplankton were retained from a 250ml filtered sample on Millipore 5µm membrane filters and pigment was extracted as before. After extraction, chl-a was measured on a Turner fluorometer (Welschmeyer technique).

For POC/N, between 1000 and 2000ml seawater was filtered onto pre-ashed Whatman GF/F filters. These were then placed in Eppendorf tubes and dried overnight in an oven at 30°C for storage prior to analysis using a Thermo Finnegan Flash EA1112 Elemental Analyser.

For BSi, between 250 and 500ml of seawater was filtered onto Whatman 0.8µm polycarbonate filters. After filtration, the filters were placed into plastic 20ml scintillation vials to dry at room temperature prior to later digestion and analysis using a liquid scintillation counter.

For PIC, which is dominated by calcite, and provides a measure of coccolithophore abundance. Between 250-500ml seawater was filtered onto Whatman 0.8µm polycarbonate filters that were then rinsed in buffered ammonium solution to remove salts. The filters were placed in 60ml centrifuge tubes to dry at room temperature prior to analysis using a liquid scintillation counter.

BODC data banking procedures

The data were originally submitted to BODC in an Excel file named 'D354_bottle_compendium_031011.xlsx'. This file contains a single worksheet where all metadata and data (CTD sensor data as well as discrete sample data) associated with each Niskin bottle fired throughout all casts of the cruise are stored.

Parameter details are displayed in the table below:

Originator's Variable Units Description BODC Parameter Code Units Comments
Chlorophyll total µg/l Concentration of chlorophyll-a {chl-a CAS 479-61-8} per unit volume of the water body [particulate >GF/F phase] by filtration, acetone extraction and fluorometry CPHLFLP1 mg m-3 Equal units - no conversion needed
Chlorophyll >5u µg/l Concentration of chlorophyll-a {chl-a CAS 479-61-8} per unit volume of the water body [particulate >5um phase] by filtration, acetone extraction and fluorometry SCHLFLPA mg m-3 Equal units - no conversion needed
N (PON) µmol/l Concentration of total nitrogen {total_N} {PON} per unit volume of the water body [particulate >GF/F phase] by filtration and elemental analysis NTOTCNP1 µmol/l -
C (POC) µmol/l Concentration of total carbon {total_C CAS 7440-44-0} {POC} per unit volume of the water body [particulate >GF/F phase] by filtration, no acidification and elemental analysis CORGCNP1 µmol/l -
Bsi µmol/l Concentration of biogenic silica {BSi opal} per unit volume of the water body [particulate >0.8um phase] OPALW8XX µmol/l -
PIC µmol/l Concentration of inorganic carbon {inorganic_C CAS 7440-44-0} per unit volume of the water body [particulate >0.8um phase] CCA17035 µmol/l -

No flags were submitted by the originator and no flags have been added by BODC.


Project Information

Iron Biogeochemistry in the high latitude North Atlantic - Irminger Basin Iron Study (IBIS)

Funding

Funding was provided by NERC, in the form of four standard (full Economic Cost - fEC) grants with a total value of £528,607. The project was a study of the iron (Fe) biogeochemistry in the high latitude North Atlantic, with the results providing a better understanding of the role that nutrients like iron play in the growth of phytoplankton cells in the ocean. The gathered data were intended to help computer modellers to design improved climate models that would allow for better predictions of the extent of climate change over the next hundreds of years.

Project dates - 21 June 2007 to 08 November 2013.

Background

With the rise in carbon dioxide concentrations throughout the world, the importance of carbon-ingesting marine plants, such as phytoplankton is becoming more important. As phytoplankton take up atmospheric carbon dioxide, they are helping to reduce the atmospheric concentration. Recently it has been discovered that the phytoplankton in many of the world's oceans are lacking in iron. For example, in the Southern Ocean, phytoplankton cell growth is limited by very low iron concentrations. Thus, they do not remove as much carbon dioxide as they could. Recent studies have suggested that iron may even play a role in the phytoplankton growth in the high latitude North Atlantic, which was thought to be iron replete.

Objectives

The main objective of this project was to study the iron biogeochemistry of the high latitude North Atlantic, assess whether community productivity in parts of the high latitude North Atlantic was iron limited following the annual spring bloom, and to determine the factors which lead to this situation. This project studied whether iron was limiting phytoplankton growth in the study area, by undertaking two cruises and taking samples of water, sedimenting material, and atmospheric dust and rain. The project also directly investigated whether iron is limiting the growth of phytoplankton in water samples from the study area.

Participants

Organisations directly involved
  • University of Southampton, School of Ocean and Earth Science.
  • University of Liverpool, Earth Surface Dynamics.
  • University of Essex, Biological Sciences.
  • University of East Anglia, Environmental Sciences.
Scientific personnel
  • Prof. Eric Achterberg, University of Southampton, School of Ocean and Earth Science (Principal Investigator)
  • Dr. Gary Fones, University of Portsmouth, School of Earth and Environmental Sciences
  • Dr. Richard Sanders, National Oceanography Centre, Science and Technology
  • Dr. Christopher Mark Moore, University of Southampton, School of Ocean and Earth Science
  • Prof. Richard Geider University of Essex, Biological Sciences
  • Prof. Tim Jickells, University of East Anglia, Environmental Sciences
  • Prof. Ric Williams, University of Liverpool, Earth, Ocean and Ecological Sciences

Methodology

  • Took samples of water, sediments, atmospheric dust and rain.
  • Calculated the supply ratios of iron (Fe) to nitrogen (N), phosphorus (P) and carbon (C) to the surface oceans and in sedimenting material.
  • Calculated the oceanic transfers of these elements using models.
  • Assessed whether iron was limiting phytoplankton growth using both models and water samples analysis.

More information can be found within the Gateway to Research website.

Fieldwork

Two research cruises

  • RRS Discovery D350 - 26 April 2010 to 09 May 2010. Departed from Govan, UK and arrived in Reykjavík, Iceland. Study area: North Atlantic Ocean - Irminger and Iceland Basins. Principal Scientist: Dr. Mark Moore, University of Southampton.
  • RRS Discovery D354 - 10 July 2010 to 11 August 2010. Departed from Avonmouth, UK and arrived in Birkenhead, UK. Study area: North Atlantic Ocean - Iceland and Irminger Basins. Principal Scientist: Prof. Eric Achterberg, University of Southampton.

Instrumentation

  • Stainless Steel CTD rosette
  • Titanium CTD rosette
  • VM ADCP 75 kHz
  • VM ADCP 150 kHz
  • Stand Alone Pump Systems (SAPS)
  • PELAGRA - Neutrally Buoyant Sediment Traps
  • Trace metal clean tow fish
  • Seasoar with CTD, fluorometer and Laser Optical Plankton Counter (LOPC)
  • Zooplankton nets
  • Underway - Navigation, surface and meteorology

Data Activity or Cruise Information

Data Activity

Start Date (yyyy-mm-dd) 2010-08-04
End Date (yyyy-mm-dd) 2010-08-04
Organization Undertaking ActivityUniversity of Southampton School of Ocean and Earth Science
Country of OrganizationUnited Kingdom
Originator's Data Activity IdentifierD354_CTD_CTD_S_033
Platform Categorylowered unmanned submersible

BODC Sample Metadata Report for D354_CTD_CTD_S_033

Sample reference number Nominal collection volume(l) Bottle rosette position Bottle firing sequence number Minimum pressure sampled (dbar) Maximum pressure sampled (dbar) Depth of sampling point (m) Bottle type Sample quality flag Bottle reference Comments
1186409   20.00 1 1 2234.00 2235.00 2201.50 Niskin bottle No problem reported    
1186412   20.00 2 2 1518.30 1519.30 1498.90 Niskin bottle No problem reported    
1186415   20.00 3 3 1016.40 1017.40 1004.80 Niskin bottle No problem reported    
1186418   20.00 4 4  511.40  512.40  506.40 Niskin bottle No problem reported    
1186421   20.00 5 5  258.80  259.80  256.70 Niskin bottle No problem reported    
1186424   20.00 6 6  157.80  158.80  156.70 Niskin bottle No problem reported    
1186427   20.00 7 7  107.50  108.50  106.90 Niskin bottle No problem reported    
1186430   20.00 8 8   82.10   83.10   81.80 Niskin bottle No problem reported    
1186433   20.00 9 9   56.70   57.70   56.60 Niskin bottle Bottle misfire   Did Not Close
1186436   20.00 10 10   56.70   57.70   56.60 Niskin bottle No problem reported    
1186439   20.00 11 11   40.40   41.40   40.50 Niskin bottle No problem reported    
1186442   20.00 12 12   40.40   41.40   40.50 Niskin bottle No problem reported    
1186445   20.00 13 13   30.30   31.30   30.50 Niskin bottle No problem reported    
1186448   20.00 14 14   30.30   31.30   30.50 Niskin bottle No problem reported    
1186451   20.00 15 15   20.10   21.10   20.40 Niskin bottle No problem reported    
1186454   20.00 16 16   20.10   21.10   20.40 Niskin bottle No problem reported    
1186457   20.00 17 17   20.10   21.10   20.40 Niskin bottle No problem reported    
1186460   20.00 18 18   20.20   21.20   20.50 Niskin bottle No problem reported    
1186463   20.00 19 19   10.10   11.10   10.50 Niskin bottle No problem reported    
1186466   20.00 20 20   10.00   11.00   10.40 Niskin bottle No problem reported    
1186469   20.00 21 21    6.10    7.10    6.50 Niskin bottle No problem reported    
1186472   20.00 22 22    6.10    7.10    6.50 Niskin bottle No problem reported    
1186475   20.00 23 23    6.10    7.10    6.50 Niskin bottle No problem reported    
1186478   20.00 24 24    6.10    7.10    6.50 Niskin bottle No problem reported    

Please note:the supplied parameters may not have been sampled from all the bottle firings described in the table above. Cross-match the Sample Reference Number above against the SAMPRFNM value in the data file to identify the relevant metadata.

Related Data Activity activities are detailed in Appendix 1

Cruise

Cruise Name D354
Departure Date 2010-07-04
Arrival Date 2010-08-11
Principal Scientist(s)Eric Pieter Achterberg (University of Southampton School of Ocean and Earth Science)
Ship RRS Discovery

Complete Cruise Metadata Report is available here


Fixed Station Information


No Fixed Station Information held for the Series


BODC Quality Control Flags

The following single character qualifying flags may be associated with one or more individual parameters with a data cycle:

Flag Description
Blank Unqualified
< Below detection limit
> In excess of quoted value
A Taxonomic flag for affinis (aff.)
B Beginning of CTD Down/Up Cast
C Taxonomic flag for confer (cf.)
D Thermometric depth
E End of CTD Down/Up Cast
G Non-taxonomic biological characteristic uncertainty
H Extrapolated value
I Taxonomic flag for single species (sp.)
K Improbable value - unknown quality control source
L Improbable value - originator's quality control
M Improbable value - BODC quality control
N Null value
O Improbable value - user quality control
P Trace/calm
Q Indeterminate
R Replacement value
S Estimated value
T Interpolated value
U Uncalibrated
W Control value
X Excessive difference

SeaDataNet Quality Control Flags

The following single character qualifying flags may be associated with one or more individual parameters with a data cycle:

Flag Description
0 no quality control
1 good value
2 probably good value
3 probably bad value
4 bad value
5 changed value
6 value below detection
7 value in excess
8 interpolated value
9 missing value
A value phenomenon uncertain
B nominal value
Q value below limit of quantification

Appendix 1: D354_CTD_CTD_S_033

Related series for this Data Activity are presented in the table below. Further information can be found by following the appropriate links.

If you are interested in these series, please be aware we offer a multiple file download service. Should your credentials be insufficient for automatic download, the service also offers a referral to our Enquiries Officer who may be able to negotiate access.

Series IdentifierData CategoryStart date/timeStart positionCruise
1974252Water sample data2010-08-04 04:52:0061.2601 N, 20.7075 WRRS Discovery D354
1974854Water sample data2010-08-04 04:52:0061.2601 N, 20.7075 WRRS Discovery D354