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Metadata Report for BODC Series Reference Number 2047499


Metadata Summary

Data Description

Data Category Water sample data
Instrument Type
NameCategories
Niskin bottle  discrete water samplers
Shimadzu TOC-L Total Organic Carbon Analyser series  elemental analysers
Instrument Mounting lowered unmanned submersible
Originating Country United Kingdom
Originator Dr Robyn Tuerena
Originating Organization University of Liverpool Department of Earth, Ocean and Ecological Sciences
Processing Status banked
Online delivery of data Download available - Ocean Data View (ODV) format
Project(s) RidgeMix
 

Data Identifiers

Originator's Identifier JR15007_CTD_DCDN_4923:CTD_043
BODC Series Reference 2047499
 

Time Co-ordinates(UT)

Start Time (yyyy-mm-dd hh:mm) 2016-06-18 00:34
End Time (yyyy-mm-dd hh:mm) -
Nominal Cycle Interval -
 

Spatial Co-ordinates

Latitude 27.99645 N ( 27° 59.8' N )
Longitude 49.99540 W ( 49° 59.7' W )
Positional Uncertainty 0.01 to 0.05 n.miles
Minimum Sensor or Sampling Depth 10.0 m
Maximum Sensor or Sampling Depth 4500.0 m
Minimum Sensor or Sampling Height 234.6 m
Maximum Sensor or Sampling Height 4724.6 m
Sea Floor Depth 4734.6 m
Sea Floor Depth Source PEVENT
Sensor or Sampling Distribution Unspecified -
Sensor or Sampling Depth Datum Unspecified -
Sea Floor Depth Datum Instantaneous - Depth measured below water line or instantaneous water body surface
 

Parameters

BODC CODERankUnitsTitle
ADEPZZ011MetresDepth (spatial coordinate) relative to water surface in the water body
BOTTFLAG1Not applicableSampling process quality flag (BODC C22)
CORGCOF11Micromoles per litreConcentration of organic carbon {organic_C CAS 7440-44-0} {DOC} per unit volume of the water body [dissolved plus reactive particulate
FIRSEQID1DimensionlessBottle firing sequence number
ROSPOSID1DimensionlessBottle rosette position identifier
SAMPRFNM1DimensionlessSample reference number

Definition of BOTTFLAG

BOTTFLAGDefinition
0The sampling event occurred without any incident being reported to BODC.
1The filter in an in-situ sampling pump physically ruptured during sample resulting in an unquantifiable loss of sampled material.
2Analytical evidence (e.g. surface water salinity measured on a sample collected at depth) indicates that the water sample has been contaminated by water from depths other than the depths of sampling.
3The feedback indicator on the deck unit reported that the bottle closure command had failed. General Oceanics deck units used on NERC vessels in the 80s and 90s were renowned for reporting misfires when the bottle had been closed. This flag is also suitable for when a trigger command is mistakenly sent to a bottle that has previously been fired.
4During the sampling deployment the bottle was fired in an order other than incrementing rosette position. Indicative of the potential for errors in the assignment of bottle firing depth, especially with General Oceanics rosettes.
5Water was reported to be escaping from the bottle as the rosette was being recovered.
6The bottle seals were observed to be incorrectly seated and the bottle was only part full of water on recovery.
7Either the bottle was found to contain no sample on recovery or there was no bottle fitted to the rosette position fired (but SBE35 record may exist).
8There is reason to doubt the accuracy of the sampling depth associated with the sample.
9The bottle air vent had not been closed prior to deployment giving rise to a risk of sample contamination through leakage.

Definition of Rank

  • Rank 1 is a one-dimensional parameter
  • Rank 2 is a two-dimensional parameter
  • Rank 0 is a one-dimensional parameter describing the second dimension of a two-dimensional parameter (e.g. bin depths for moored ADCP data)

Problem Reports

No Problem Report Found in the Database


Data Access Policy

Open Data supplied by Natural Environment Research Council (NERC)

You must always use the following attribution statement to acknowledge the source of the information: "Contains data supplied by Natural Environment Research Council."


Narrative Documents

Shimadzu TOC-L Total Organic Carbon Analyser series

A series of total organic carbon analysers designed to make sample measurements of total carbon (TC), inorganic carbon (IC) and non-purgeable organic carbon (NPOC); total organic carbon (TOC) can be calculated by subtracting IC from TC measurements. The instrument uses the 680 degrees Celsius combustion catalytic oxidation method to analyse aqueous samples, and optionally solid and gas samples. An optional accessory enables the measurement of particulate organic carbon (POC) and total nitrogen (TN). Each analyser is available as an LCD and keyboard-equipped standalone model, or as a PC-controlled model. The measurement range of Total Carbon is 4 µg/L to 30000 mg/L, with a detection limit of 4 µg/L and an accuracy of 1.5%.

For more information, please see this document: https://www.bodc.ac.uk/data/documents/nodb/pdf/415_c391e079g.pdf

Niskin Bottle

The Niskin bottle is a device used by oceanographers to collect subsurface seawater samples. It is a plastic bottle with caps and rubber seals at each end and is deployed with the caps held open, allowing free-flushing of the bottle as it moves through the water column.

Standard Niskin

The standard version of the bottle includes a plastic-coated metal spring or elastic cord running through the interior of the bottle that joins the two caps, and the caps are held open against the spring by plastic lanyards. When the bottle reaches the desired depth the lanyards are released by a pressure-actuated switch, command signal or messenger weight and the caps are forced shut and sealed, trapping the seawater sample.

Lever Action Niskin

The Lever Action Niskin Bottle differs from the standard version, in that the caps are held open during deployment by externally mounted stainless steel springs rather than an internal spring or cord. Lever Action Niskins are recommended for applications where a completely clear sample chamber is critical or for use in deep cold water.

Clean Sampling

A modified version of the standard Niskin bottle has been developed for clean sampling. This is teflon-coated and uses a latex cord to close the caps rather than a metal spring. The clean version of the Levered Action Niskin bottle is also teflon-coated and uses epoxy covered springs in place of the stainless steel springs. These bottles are specifically designed to minimise metal contamination when sampling trace metals.

Deployment

Bottles may be deployed singly clamped to a wire or in groups of up to 48 on a rosette. Standard bottles and Lever Action bottles have a capacity between 1.7 and 30 L. Reversing thermometers may be attached to a spring-loaded disk that rotates through 180° on bottle closure.

Dissolved Organic Carbon for Cruise JR15007

Originator's Protocol for Data Acquisition and Analysis

Sampling Collection

DOC samples were taken from each deep CTD cast and were collected after oxygen (either first, or second in order). They were collected straight from the valve, after triple rinsing with sea water, into triple MilliQ rinsed 1 L HDPE bottles. In the main laboratory, for each water sample, a glass filtration rig made up of a 45 mm deep and 0.7 µm pore sized glass fibre filter (GFF) was flushed through with sample water four times before 20 ml of water was collected into a pre-acidified (20 µl hydrochloric acid, 50 % v/v HCl) 20 ml glass vial with a screw cap and septum. GFFs were changed every four to five samples. Following each CTD cast, the rig was dismantled and placed in a 10 % acid bath overnight. Prior to sampling, the rig was rinsed, reassembled and covered in muffled foil (350 °C for 24 hours). Samples were stored upright in the 4 °C fridge prior to analysis at the University of Liverpool.

Sample analysis

Concentrations of dissolved organic carbon were determined on Shimadzu TOC-V and TOC-L analysers. Internal calibration standards of KHP, glycine and leucine were used and reference materials from the University of Miami (Hansell lab) were run every 4-6 samples. Results were used if an average concentration was within the accepted range of the certified value.

References Cited

Pan, X., Achterberg, E. P., Sanders, R., Poulton, A. J., Oliver, K. I. C., & Robinson, C. 2014. Dissolved organic carbon and apparent oxygen utilization in the Atlantic Ocean. Deep Sea Research Part I: Oceanographic Research Papers, 85, 80?87. doi:10.1016/j.dsr.2013.12.003

JR15007 Cruise report

Further information can be found in the JR15007 Cruise report.

BODC Data Processing Procedures

Data were received in excel format and loaded into the BODC database using established BODC data banking procedures. A parameter mapping table is provided below:

Originator's Variable Originator's Units BODC Parameter Code BODC Unit Comments
Dissolved Organic Carbon umol/l CORGCOF1 umol/l -

Data Quality Report

On the 13th of June 2016 samples were collected in the water column above a hydrothermal vent. This can be seen reflected in the dissolved organic carbon values.


Project Information

A nutrient and carbon pump over mid-ocean ridges (RidgeMix)

RidgeMix is a five year (August 2014 to February 2019) research programme which received funding from the Natural Environment Research Council (NERC). The aim of the programme was to address the problem of how deep nutrients are transported into the surface waters in mid-latitudes, by testing a new view: tides passing over the mid-Atlantic ridge generate enhanced turbulence and mixing, which in turn provides a nutrient supply to the upper thermocline waters. These nutrients are then transported horizontally along density surfaces over the western side of the basin, probably being swept along the Gulf Stream and eventually passing into the winter mixed surface layer. When this surface layer shallows and warms in spring, the nutrients are then available to the phytoplankton.

Fieldwork involved collecting measurements of the turbulence and nutrient concentrations over and adjacent to the Mid-Atlantic Ridge, using a novel long-term moored array of instruments along the ridge, deployed over a five-week research cruise. Sampling was done sufficiently quickly to resolve tidal changes in currents and mixing over the ridge. A second component of the fieldwork will use computer models of circulation in the Atlantic to explore the wider implications of the fieldwork observations, to determine whether or not mixing over the mid-Atlantic ridge really does provide enough nutrients to explain the phytoplankton production in the mid-latitude North Atlantic.

RidgeMix was a collaborative project involving five organisations, of which three were UK based and two were US based. The project was led by the Professor Jonathan Sharples, University of Liverpool, Earth, Ocean and Ecological Sciences. Collaborators were:

  • National Oceanography Centre, Science and Technology (UK)
  • University of Southampton, School of Earth and Ocean Science (UK)
  • Woods Hole Oceanographic Institute (US)
  • Monterey Bay Aquarium Research Institute (US)

  • Data Activity or Cruise Information

    Data Activity

    Start Date (yyyy-mm-dd) 2016-06-18
    End Date (yyyy-mm-dd) Ongoing
    Organization Undertaking ActivityNational Oceanography Centre, Liverpool
    Country of OrganizationUnited Kingdom
    Originator's Data Activity IdentifierJR15007_CTD_CTD_043
    Platform Categorylowered unmanned submersible

    BODC Sample Metadata Report for JR15007_CTD_CTD_043

    Sample reference number Nominal collection volume(l) Bottle rosette position Bottle firing sequence number Minimum pressure sampled (dbar) Maximum pressure sampled (dbar) Depth of sampling point (m) Bottle type Sample quality flag Bottle reference Comments
    1347191   20.00 1 1     4500.00 Niskin bottle No problem reported    
    1347194   20.00 2 2     4000.00 Niskin bottle No problem reported    
    1347197   20.00 3 3     3500.00 Niskin bottle No problem reported    
    1347200   20.00 4 4     3000.00 Niskin bottle No problem reported    
    1347203   20.00 5 5     2500.00 Niskin bottle No problem reported    
    1347206   20.00 6 6     2000.00 Niskin bottle No problem reported    
    1347209   20.00 7 7     1750.00 Niskin bottle No problem reported    
    1347212   20.00 8 8     1500.00 Niskin bottle No problem reported    
    1347215   20.00 9 9     1250.00 Niskin bottle No problem reported    
    1347218   20.00 10 10     1000.00 Niskin bottle No problem reported    
    1348031   20.00 11 11      900.00 Niskin bottle No problem reported    
    1348034   20.00 12 12      800.00 Niskin bottle No problem reported    
    1348037   20.00 13 13      700.00 Niskin bottle No problem reported    
    1348040   20.00 14 14      600.00 Niskin bottle No problem reported    
    1348043   20.00 15 15      500.00 Niskin bottle No problem reported    
    1348046   20.00 16 16      400.00 Niskin bottle No problem reported    
    1348049   20.00 17 17      300.00 Niskin bottle No problem reported    
    1348052   20.00 18 18      250.00 Niskin bottle No problem reported    
    1348055   20.00 19 19      200.00 Niskin bottle No problem reported    
    1348058   20.00 20 20      165.00 Niskin bottle No problem reported    
    1348061   20.00 21 21      150.00 Niskin bottle No problem reported    
    1348064   20.00 22 22      120.00 Niskin bottle No problem reported    
    1348067   20.00 23 23       60.00 Niskin bottle No problem reported    
    1348070   20.00 24 24       10.00 Niskin bottle No problem reported    

    Please note:the supplied parameters may not have been sampled from all the bottle firings described in the table above. Cross-match the Sample Reference Number above against the SAMPRFNM value in the data file to identify the relevant metadata.

    Related Data Activity activities are detailed in Appendix 1

    Cruise

    Cruise Name JR15007
    Departure Date 2016-05-25
    Arrival Date 2016-07-10
    Principal Scientist(s)Jonathan Sharples (National Oceanography Centre, Liverpool)
    Ship RRS James Clark Ross

    Complete Cruise Metadata Report is available here


    Fixed Station Information


    No Fixed Station Information held for the Series


    BODC Quality Control Flags

    The following single character qualifying flags may be associated with one or more individual parameters with a data cycle:

    Flag Description
    Blank Unqualified
    < Below detection limit
    > In excess of quoted value
    A Taxonomic flag for affinis (aff.)
    B Beginning of CTD Down/Up Cast
    C Taxonomic flag for confer (cf.)
    D Thermometric depth
    E End of CTD Down/Up Cast
    G Non-taxonomic biological characteristic uncertainty
    H Extrapolated value
    I Taxonomic flag for single species (sp.)
    K Improbable value - unknown quality control source
    L Improbable value - originator's quality control
    M Improbable value - BODC quality control
    N Null value
    O Improbable value - user quality control
    P Trace/calm
    Q Indeterminate
    R Replacement value
    S Estimated value
    T Interpolated value
    U Uncalibrated
    W Control value
    X Excessive difference

    SeaDataNet Quality Control Flags

    The following single character qualifying flags may be associated with one or more individual parameters with a data cycle:

    Flag Description
    0 no quality control
    1 good value
    2 probably good value
    3 probably bad value
    4 bad value
    5 changed value
    6 value below detection
    7 value in excess
    8 interpolated value
    9 missing value
    A value phenomenon uncertain
    B nominal value
    Q value below limit of quantification

    Appendix 1: JR15007_CTD_CTD_043

    Related series for this Data Activity are presented in the table below. Further information can be found by following the appropriate links.

    If you are interested in these series, please be aware we offer a multiple file download service. Should your credentials be insufficient for automatic download, the service also offers a referral to our Enquiries Officer who may be able to negotiate access.

    Series IdentifierData CategoryStart date/timeStart positionCruise
    1981992Water sample data2016-06-18 00:34:0027.99645 N, 49.9954 WRRS James Clark Ross JR15007
    1987754Water sample data2016-06-18 00:34:0027.99645 N, 49.9954 WRRS James Clark Ross JR15007
    2138356Water sample data2016-06-18 00:34:0227.99645 N, 49.9954 WRRS James Clark Ross JR15007