Metadata Report for BODC Series Reference Number 2110666
Metadata Summary
Problem Reports
Data Access Policy
Narrative Documents
Project Information
Data Activity or Cruise Information
Fixed Station Information
BODC Quality Flags
SeaDataNet Quality Flags
Metadata Summary
Data Description |
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Data Identifiers |
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Time Co-ordinates(UT) |
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Spatial Co-ordinates | |||||||||||||||||||||||||||||||||
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Parameters |
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Definition of BOTTFLAG | |||||||||||||||||||||||||||||||||
BOTTFLAG | Definition |
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0 | The sampling event occurred without any incident being reported to BODC. |
1 | The filter in an in-situ sampling pump physically ruptured during sample resulting in an unquantifiable loss of sampled material. |
2 | Analytical evidence (e.g. surface water salinity measured on a sample collected at depth) indicates that the water sample has been contaminated by water from depths other than the depths of sampling. |
3 | The feedback indicator on the deck unit reported that the bottle closure command had failed. General Oceanics deck units used on NERC vessels in the 80s and 90s were renowned for reporting misfires when the bottle had been closed. This flag is also suitable for when a trigger command is mistakenly sent to a bottle that has previously been fired. |
4 | During the sampling deployment the bottle was fired in an order other than incrementing rosette position. Indicative of the potential for errors in the assignment of bottle firing depth, especially with General Oceanics rosettes. |
5 | Water was reported to be escaping from the bottle as the rosette was being recovered. |
6 | The bottle seals were observed to be incorrectly seated and the bottle was only part full of water on recovery. |
7 | Either the bottle was found to contain no sample on recovery or there was no bottle fitted to the rosette position fired (but SBE35 record may exist). |
8 | There is reason to doubt the accuracy of the sampling depth associated with the sample. |
9 | The bottle air vent had not been closed prior to deployment giving rise to a risk of sample contamination through leakage. |
Definition of Rank |
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Problem Reports
No Problem Report Found in the Database
Data Access Policy
Open Data
These data have no specific confidentiality restrictions for users. However, users must acknowledge data sources as it is not ethical to publish data without proper attribution. Any publication or other output resulting from usage of the data should include an acknowledgment.
If the Information Provider does not provide a specific attribution statement, or if you are using Information from several Information Providers and multiple attributions are not practical in your product or application, you may consider using the following:
"Contains public sector information licensed under the Open Government Licence v1.0."
Narrative Documents
Marianda Versatile INstrument for the Determination of Total inorganic carbon and titration Alkalinity (VINDTA) 3C
The VINDTA 3C (Versatile INstrument for the Determination of Total inorganic carbon and titration Alkalinity) is a laboratory alkalinity titration system combined with an extraction unit for coulometric titration, which simultaneously determines the alkalinity and dissolved inorganic carbon content of a sample. The sample transport is performed with peristaltic pumps and acid is added to the sample using a membrane pump. No pressurizing system is required and only one gas supply (nitrogen or dry and CO2-free air) is necessary. The system uses a Metrohm Titrino 719S, an ORION-Ross pH electrode and a Metrohm reference electrode. The burette, the pipette and the analysis cell have a water jacket around them. Precision is typically ± 1 µmol kg-1 for TA and/or DIC in open ocean water.
Further details can be found in the manufacturer's brochure.
Niskin Bottle
The Niskin bottle is a device used by oceanographers to collect subsurface seawater samples. It is a plastic bottle with caps and rubber seals at each end and is deployed with the caps held open, allowing free-flushing of the bottle as it moves through the water column.
Standard Niskin
The standard version of the bottle includes a plastic-coated metal spring or elastic cord running through the interior of the bottle that joins the two caps, and the caps are held open against the spring by plastic lanyards. When the bottle reaches the desired depth the lanyards are released by a pressure-actuated switch, command signal or messenger weight and the caps are forced shut and sealed, trapping the seawater sample.
Lever Action Niskin
The Lever Action Niskin Bottle differs from the standard version, in that the caps are held open during deployment by externally mounted stainless steel springs rather than an internal spring or cord. Lever Action Niskins are recommended for applications where a completely clear sample chamber is critical or for use in deep cold water.
Clean Sampling
A modified version of the standard Niskin bottle has been developed for clean sampling. This is teflon-coated and uses a latex cord to close the caps rather than a metal spring. The clean version of the Levered Action Niskin bottle is also teflon-coated and uses epoxy covered springs in place of the stainless steel springs. These bottles are specifically designed to minimise metal contamination when sampling trace metals.
Deployment
Bottles may be deployed singly clamped to a wire or in groups of up to 48 on a rosette. Standard bottles and Lever Action bottles have a capacity between 1.7 and 30 L. Reversing thermometers may be attached to a spring-loaded disk that rotates through 180° on bottle closure.
Dissolved Inorganic Carbon (DIC, TCO2) and Total Alkalinity (TA) discrete samples from CTD bottles during RRS James Cook cruise 71
Originator's Protocol for Data Acquisition and Analysis
Sampling Strategy
Samples were collected at up to 12 depth levels at 7 CTD stations.
Sampling Method
Samples were collected from 10L CTD Niskin bottles into special ground glass topped glass bottles using a small length of narrow bore tubing inserted into the bottom of the bottle. Care was taken to ensure that no gas bubbles were present in the sample by first inverting the bottle and revolving it slowly while returning it to an upright position. Once filled the bottle was flushed from the bottom with three times its volume before inserting the glass stopper. The sample was then opened in a fume hood and 2.5 mL of seawater removed and 50 µL of mercuric chloride added by gently placing the pipette tip below the surface and expelling the liquid. A small amount of silicone grease was placed on the stopper before it was replaced and sealed into the bottle with tape.
TCO2 Analysis Method
The analysis of DIC was undertaken in National Oceanography Centre, Southampton using VINDTA 3C (Marianda, Germany, unit 11 and unit 24). By reaction with phosphoric acid, dissolved inorganic carbon of the sample was converted to CO2. The CO2 gas was carried by N2 into the coulometer cell and reacts with monoethanolamine to form a titratable acid which causes the fading of the blue indicator. Responding to the colour change, a current flow generates base to remove the acid and restore the indicator to the original colour. The amount of CO2 can be estimated from the required coulombs of the current required (corrected for blank), and DIC concentration can then be calculated given the known sample volume.
Standardization Technique
In order to standardize the results, Certified Reference Materials (CRM) from A.G. Dickson, Scripps Institution of Oceanography were analysed as standards to calibrate the instrument at the beginning and end of each day of analysis. A daily correction factor was applied to all measured values according to Millero et al. (1998).
Sample Volume
19.1681 mL
Field Replicate Info
Repeated measurements on the same batch of seawater (n>=3) in the lab gave consistent results (precision for the whole dataset estimated as 2.0±0.7 µmol kg-1).
Poisoning Correction Description:
Saturated HgCl2 (0.05 mL) is added to the collected sample to prevent the sample from biological modification. Since we use a large sampling volume (250 mL), the dilution effect of adding HgCl2 is neglectable (0.02 %).
Poison Volume:
0.05 mL
Accuracy Info:
Repeated measurements on the same batch of seawater (n>=3) were undertaken every day prior to sample analysis in order to assess the precision of the method. The precision was estimated for the whole dataset to be 2.0±0.7 µmol kg-1 for DIC and 1.2±0.5 µmol kg-1 for TA. The accuracy of the measurement is assured by the standardization using the CRM from A.G. Dickson, Scripps Institution of Oceanography on daily basis.
Alkalinity (TA) Analysis method
Alkalinity was resolved using the non-linear curve fitting (least-squares) approach of Dickson et al. (2007).
Type of Tritration
Titration with HCl (~0.10 mol L-1) uses a closed cell procedure with an open cell, with a pH half cell electrode (glass bodied Orion 8101SC Ross, USA) and an Ag/AgCl reference electrode (model 6.0729.100, Metrohm, Switzerland).
Cell Type
open cell
Sample Volume
97.409 mL
Accuracy Info
Repeated measurements on the same batch of seawater (n>=3) were undertaken every day prior to sample analysis in order to assess the precision of the method. The precision was estimated for the whole dataset to be 2.0±0.7 µmol kg-1 for DIC and 1.2±0.5 µmol kg-1 for TA. The accuracy of the measurement is assured by the standardization using the CRM from A.G. Dickson, Scripps Institution of Oceanography on daily basis.
References
Dickson A.G., Sabine C.L., and Christian J.R., 2007. Guide to best practices for ocean CO2 measurements. PICES Special Publication 3, 191 pp.
Hartman S.E., Dumousseaud C. and Roberts A., 2011 Operating manual for the Marianda (Versatile INstrument for the Determination of Titration Alkalinity) VINDTA 3C for the laboratory based determination of Total Alkalinity and Total Dissolved Inorganic Carbon in seawater. Southampton, UK, National Oceanography Centre, 66 pp. (National Oceanography Centre Internal Document, 01).
BODC Data Processing Procedures
The data arrived at BODC in one Excel (.xls) file containing discrete samples collected from the underway non-toxic supply and CTD deployments. Data received were loaded into the BODC database using established BODC data banking procedures. Data were loaded into BODC's database without any changes. Originator's variables were mapped to appropriate BODC parameter codes as follows:
Originator's variable | Originator's units | Description | BODC Code | BODC units | Comments |
DIC CRMd | µmol kg-1 | Dissolved inorganic carbon (DIC) or TCO2 | TCO2MSXX | µmol kg-1 | |
TA CRMd | µmol kg-1 | Total alkalinity (TA) | MDMAP014 | µmol kg-1 | |
salin | Salinity (CTD sensor) | Not transferred as part of this dataset | |||
temp | Temperature (CTD sensor) | Not transferred as part of this dataset | |||
NO3 | µmol L-1 | Inorganic nitrate (nitrate+nitrite) | Not transferred as part of this dataset | ||
SiO4 | µmol L-1 | Inorganic silicate | Not transferred as part of this dataset | ||
PO4 | µmol L-1 | Inorganic phosphate | Not transferred as part of this dataset |
Data Quality Report
None (BODC assessment)
Problem Report
None (BODC assessment)
Project Information
Oceans 2025 - The NERC Marine Centres' Strategic Research Programme 2007-2012
Who funds the programme?
The Natural Environment Research Council (NERC) funds the Oceans 2025 programme, which was originally planned in the context of NERC's 2002-2007 strategy and later realigned to NERC's subsequent strategy (Next Generation Science for Planet Earth; NERC 2007).
Who is involved in the programme?
The Oceans 2025 programme was designed by and is to be implemented through seven leading UK marine centres. The marine centres work together in coordination and are also supported by cooperation and input from government bodies, universities and other partners. The seven marine centres are:
- National Oceanography Centre, Southampton (NOCS)
- Plymouth Marine Laboratory (PML)
- Marine Biological Association (MBA)
- Sir Alister Hardy Foundation for Marine Science (SAHFOS)
- Proudman Oceanographic Laboratory (POL)
- Scottish Association for Marine Science (SAMS)
- Sea Mammal Research Unit (SMRU)
Oceans2025 provides funding to three national marine facilities, which provide services to the wider UK marine community, in addition to the Oceans 2025 community. These facilities are:
- British Oceanographic Data Centre (BODC), hosted at POL
- Permanent Service for Mean Sea Level (PSMSL), hosted at POL
- Culture Collection of Algae and Protozoa (CCAP), hosted at SAMS
The NERC-run Strategic Ocean Funding Initiative (SOFI) provides additional support to the programme by funding additional research projects and studentships that closely complement the Oceans 2025 programme, primarily through universities.
What is the programme about?
Oceans 2025 sets out to address some key challenges that face the UK as a result of a changing marine environment. The research funded through the programme sets out to increase understanding of the size, nature and impacts of these changes, with the aim to:
- improve knowledge of how the seas behave, not just now but in the future;
- help assess what that might mean for the Earth system and for society;
- assist in developing sustainable solutions for the management of marine resources for future generations;
- enhance the research capabilities and facilities available for UK marine science.
In order to address these aims there are nine science themes supported by the Oceans 2025 programme:
- Climate, circulation and sea level (Theme 1)
- Marine biogeochemical cycles (Theme 2)
- Shelf and coastal processes (Theme 3)
- Biodiversity and ecosystem functioning (Theme 4)
- Continental margins and deep ocean (Theme 5)
- Sustainable marine resources (Theme 6)
- Technology development (Theme 8)
- Next generation ocean prediction (Theme 9)
- Integration of sustained observations in the marine environment (Theme 10)
In the original programme proposal there was a theme on health and human impacts (Theme 7). The elements of this Theme have subsequently been included in Themes 3 and 9.
When is the programme active?
The programme started in April 2007 with funding for 5 years.
Brief summary of the programme fieldwork/data
Programme fieldwork and data collection are to be achieved through:
- physical, biological and chemical parameters sampling throughout the North and South Atlantic during collaborative research cruises aboard NERC's research vessels RRS Discovery, RRS James Cook and RRS James Clark Ross;
- the Continuous Plankton Recorder being deployed by SAHFOS in the North Atlantic and North Pacific on 'ships of opportunity';
- physical parameters measured and relayed in near real-time by fixed moorings and ARGO floats;
- coastal and shelf sea observatory data (Liverpool Bay Coastal Observatory (LBCO) and Western Channel Observatory (WCO)) using the RV Prince Madog and RV Quest.
The data is to be fed into models for validation and future projections. Greater detail can be found in the Theme documents.
Data Activity or Cruise Information
Data Activity
Start Date (yyyy-mm-dd) | 2012-05-03 |
End Date (yyyy-mm-dd) | 2012-05-03 |
Organization Undertaking Activity | National Oceanography Centre, Southampton |
Country of Organization | United Kingdom |
Originator's Data Activity Identifier | JC071_CTD_JC071-019-3 |
Platform Category | lowered unmanned submersible |
No Document Information Held for the Series
Related Data Activity activities are detailed in Appendix 1
Cruise
Cruise Name | JC071 |
Departure Date | 2012-04-29 |
Arrival Date | 2012-05-12 |
Principal Scientist(s) | Richard Stephen Lampitt (National Oceanography Centre, Southampton) |
Ship | RRS James Cook |
Complete Cruise Metadata Report is available here
Fixed Station Information
No Fixed Station Information held for the Series
BODC Quality Control Flags
The following single character qualifying flags may be associated with one or more individual parameters with a data cycle:
Flag | Description |
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Blank | Unqualified |
< | Below detection limit |
> | In excess of quoted value |
A | Taxonomic flag for affinis (aff.) |
B | Beginning of CTD Down/Up Cast |
C | Taxonomic flag for confer (cf.) |
D | Thermometric depth |
E | End of CTD Down/Up Cast |
G | Non-taxonomic biological characteristic uncertainty |
H | Extrapolated value |
I | Taxonomic flag for single species (sp.) |
K | Improbable value - unknown quality control source |
L | Improbable value - originator's quality control |
M | Improbable value - BODC quality control |
N | Null value |
O | Improbable value - user quality control |
P | Trace/calm |
Q | Indeterminate |
R | Replacement value |
S | Estimated value |
T | Interpolated value |
U | Uncalibrated |
W | Control value |
X | Excessive difference |
SeaDataNet Quality Control Flags
The following single character qualifying flags may be associated with one or more individual parameters with a data cycle:
Flag | Description |
---|---|
0 | no quality control |
1 | good value |
2 | probably good value |
3 | probably bad value |
4 | bad value |
5 | changed value |
6 | value below detection |
7 | value in excess |
8 | interpolated value |
9 | missing value |
A | value phenomenon uncertain |
B | nominal value |
Q | value below limit of quantification |
Appendix 1: JC071_CTD_JC071-019-3
Related series for this Data Activity are presented in the table below. Further information can be found by following the appropriate links.
If you are interested in these series, please be aware we offer a multiple file download service. Should your credentials be insufficient for automatic download, the service also offers a referral to our Enquiries Officer who may be able to negotiate access.
Series Identifier | Data Category | Start date/time | Start position | Cruise |
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1876651 | Water sample data | 2012-05-03 20:41:00 | 49.02308 N, 16.45409 W | RRS James Cook JC071 |