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Metadata Report for BODC Series Reference Number 1745233


Metadata Summary

Data Description

Data Category CTD or STD cast
Instrument Type
NameCategories
Sea-Bird SBE 43 Dissolved Oxygen Sensor  dissolved gas sensors
Sea-Bird SBE 911plus CTD  CTD; water temperature sensor; salinity sensor
Tritech PA-200 altimeter  altimeters
WET Labs {Sea-Bird WETLabs} C-Star transmissometer  transmissometers
Biospherical Instruments QCP-2300 underwater PAR sensor  radiometers
Paroscientific 410K Pressure Transducer  water temperature sensor; water pressure sensors
Sea-Bird SBE 3plus (SBE 3P) temperature sensor  water temperature sensor
Sea-Bird SBE 4C conductivity sensor  salinity sensor
Chelsea Technologies Group Aquatracka III fluorometer  fluorometers
Instrument Mounting lowered unmanned submersible
Originating Country United Kingdom
Originator Dr Brian King
Originating Organization National Oceanography Centre, Southampton
Processing Status banked
Online delivery of data Download available - Ocean Data View (ODV) format
Project(s) DIMES
 

Data Identifiers

Originator's Identifier CTD_JR281_123_2DB
BODC Series Reference 1745233
 

Time Co-ordinates(UT)

Start Time (yyyy-mm-dd hh:mm) 2013-04-25 14:33
End Time (yyyy-mm-dd hh:mm) -
Nominal Cycle Interval 2.0 decibars
 

Spatial Co-ordinates

Latitude 53.15000 S ( 53° 9.0' S )
Longitude 54.64990 W ( 54° 39.0' W )
Positional Uncertainty 0.0 to 0.01 n.miles
Minimum Sensor or Sampling Depth 10.9 m
Maximum Sensor or Sampling Depth 2888.88 m
Minimum Sensor or Sampling Height 10.13 m
Maximum Sensor or Sampling Height 2888.11 m
Sea Floor Depth 2899.01 m
Sea Floor Depth Source DATAHEAD
Sensor or Sampling Distribution Variable common depth - All sensors are grouped effectively at the same depth, but this depth varies significantly during the series
Sensor or Sampling Depth Datum Approximate - Depth is only approximate
Sea Floor Depth Datum Instantaneous - Depth measured below water line or instantaneous water body surface
 

Parameters

BODC CODERankUnitsTitle
ACYCAA011DimensionlessSequence number
AHSFZZ011MetresHeight (spatial coordinate) relative to bed surface in the water body
CNCLCCI11Siemens per metreElectrical conductivity of the water body by in-situ conductivity cell and calibration against independent measurements
CPHLPM011Milligrams per cubic metreConcentration of chlorophyll-a {chl-a CAS 479-61-8} per unit volume of the water body [particulate >unknown phase] by in-situ chlorophyll fluorometer and manufacturer's calibration applied
DEPHPRST1MetresDepth (spatial coordinate) of sampling event start relative to water surface in the water body by profiling pressure sensor and conversion to depth using unspecified algorithm
DOXYSC011Micromoles per litreConcentration of oxygen {O2 CAS 7782-44-7} per unit volume of the water body [dissolved plus reactive particulate phase] by Sea-Bird SBE 43 sensor and calibration against sample data
IRRDUV011MicroEinsteins per square metre per secondDownwelling vector irradiance as photons of electromagnetic radiation (PAR wavelengths) in the water body by cosine-collector radiometer
OXYSZZ011PercentSaturation of oxygen {O2 CAS 7782-44-7} in the water body [dissolved plus reactive particulate phase]
POPTDR011PercentTransmittance (red light wavelength) per 25cm of the water body by 25cm path length red light transmissometer
POTMCV011Degrees CelsiusPotential temperature of the water body by computation using UNESCO 1983 algorithm
PRESPR011DecibarsPressure (spatial coordinate) exerted by the water body by profiling pressure sensor and correction to read zero at sea level
PSALST011DimensionlessPractical salinity of the water body by CTD and computation using UNESCO 1983 algorithm
SIGTPR011Kilograms per cubic metreSigma-theta of the water body by CTD and computation from salinity and potential temperature using UNESCO algorithm
TEMPST011Degrees CelsiusTemperature of the water body by CTD or STD
TOKGPR011Litres per kilogramConversion factor (volume to mass) for the water body by CTD and computation of density (in-situ potential temperature surface pressure) reciprocal from pressure, temperature and salinity

Definition of Rank

  • Rank 1 is a one-dimensional parameter
  • Rank 2 is a two-dimensional parameter
  • Rank 0 is a one-dimensional parameter describing the second dimension of a two-dimensional parameter (e.g. bin depths for moored ADCP data)

Problem Reports

No Problem Report Found in the Database


Data Access Policy

Open Data

These data have no specific confidentiality restrictions for users. However, users must acknowledge data sources as it is not ethical to publish data without proper attribution. Any publication or other output resulting from usage of the data should include an acknowledgment.

If the Information Provider does not provide a specific attribution statement, or if you are using Information from several Information Providers and multiple attributions are not practical in your product or application, you may consider using the following:

"Contains public sector information licensed under the Open Government Licence v1.0."


Narrative Documents

Sea-Bird Dissolved Oxygen Sensor SBE 43 and SBE 43F

The SBE 43 is a dissolved oxygen sensor designed for marine applications. It incorporates a high-performance Clark polarographic membrane with a pump that continuously plumbs water through it, preventing algal growth and the development of anoxic conditions when the sensor is taking measurements.

Two configurations are available: SBE 43 produces a voltage output and can be incorporated with any Sea-Bird CTD that accepts input from a 0-5 volt auxiliary sensor, while the SBE 43F produces a frequency output and can be integrated with an SBE 52-MP (Moored Profiler CTD) or used for OEM applications. The specifications below are common to both.

Specifications

Housing Plastic or titanium
Membrane

0.5 mil- fast response, typical for profile applications

1 mil- slower response, typical for moored applications

Depth rating

600 m (plastic) or 7000 m (titanium)

10500 m titanium housing available on request

Measurement range 120% of surface saturation
Initial accuracy 2% of saturation
Typical stability 0.5% per 1000 h

Further details can be found in the manufacturer's specification sheet.

Instrument Description

CTD Unit and Auxiliary Sensors

A Sea-Bird 9plus CTD system was used on cruise JR20130317(JR281). It was mounted on a 24-way stainless steel rosette frame, equipped with 24 10-litre Niskin bottles. The CTD was fitted with the following scientific sensors:

Station Number Sensor Serial Number Calibration Date Comments
1-128 Primary Temperature SBE-3P 5623 13/04/2012 -
1-122 Secondary Temperature SBE-3P 5645 12/04/2012 -
123-128 Secondary Temperature SBE-3P 2307 30/08/2012 -
1-45 Primary Conductivity SBE-4C 4126 12/04/2012 -
47-128 Primary Conductivity SBE-4C 1913 24/08/2012 -
1-16, 64-128 Secondary Conductivity SBE-4C 4087 12/04/2012 -
17-60 Secondary Conductivity SBE-4C 3248 24/08/2012 -
61 Secondary Conductivity SBE-4C 2813 24/08/2012 -
1-128 Paroscientific 410K Pressure Transducer 89973 22/08/2012 -
1-128 Tritech PA200 Altimeter 244738 09/05/2012 -
1-128 Sea-Bird SBE 43 dissolved oxygen sensor 2290 31/03/2012 -
1-128 Chelsea Aquatracka MKIII fluorometer 12-8513-003 15/06/2012 -
1-128 WETLabs C-Star transmissometer CST-527DR 06/09/2012 -
1-128 Biospherical QCP-2300 underwater PAR sensor 70441 24/04/2013 -

Sea-Bird Electronics SBE 911 and SBE 917 series CTD profilers

The SBE 911 and SBE 917 series of conductivity-temperature-depth (CTD) units are used to collect hydrographic profiles, including temperature, conductivity and pressure as standard. Each profiler consists of an underwater unit and deck unit or SEARAM. Auxiliary sensors, such as fluorometers, dissolved oxygen sensors and transmissometers, and carousel water samplers are commonly added to the underwater unit.

Underwater unit

The CTD underwater unit (SBE 9 or SBE 9 plus) comprises a protective cage (usually with a carousel water sampler), including a main pressure housing containing power supplies, acquisition electronics, telemetry circuitry, and a suite of modular sensors. The original SBE 9 incorporated Sea-Bird's standard modular SBE 3 temperature sensor and SBE 4 conductivity sensor, and a Paroscientific Digiquartz pressure sensor. The conductivity cell was connected to a pump-fed plastic tubing circuit that could include auxiliary sensors. Each SBE 9 unit was custom built to individual specification. The SBE 9 was replaced in 1997 by an off-the-shelf version, termed the SBE 9 plus, that incorporated the SBE 3 plus (or SBE 3P) temperature sensor, SBE 4C conductivity sensor and a Paroscientific Digiquartz pressure sensor. Sensors could be connected to a pump-fed plastic tubing circuit or stand-alone.

Temperature, conductivity and pressure sensors

The conductivity, temperature, and pressure sensors supplied with Sea-Bird CTD systems have outputs in the form of variable frequencies, which are measured using high-speed parallel counters. The resulting count totals are converted to numeric representations of the original frequencies, which bear a direct relationship to temperature, conductivity or pressure. Sampling frequencies for these sensors are typically set at 24 Hz.

The temperature sensing element is a glass-coated thermistor bead, pressure-protected inside a stainless steel tube, while the conductivity sensing element is a cylindrical, flow-through, borosilicate glass cell with three internal platinum electrodes. Thermistor resistance or conductivity cell resistance, respectively, is the controlling element in an optimized Wien Bridge oscillator circuit, which produces a frequency output that can be converted to a temperature or conductivity reading. These sensors are available with depth ratings of 6800 m (aluminium housing) or 10500 m (titanium housing). The Paroscientific Digiquartz pressure sensor comprises a quartz crystal resonator that responds to pressure-induced stress, and temperature is measured for thermal compensation of the calculated pressure.

Additional sensors

Optional sensors for dissolved oxygen, pH, light transmission, fluorescence and others do not require the very high levels of resolution needed in the primary CTD channels, nor do these sensors generally offer variable frequency outputs. Accordingly, signals from the auxiliary sensors are acquired using a conventional voltage-input multiplexed A/D converter (optional). Some Sea-Bird CTDs use a strain gauge pressure sensor (Senso-Metrics) in which case their pressure output data is in the same form as that from the auxiliary sensors as described above.

Deck unit or SEARAM

Each underwater unit is connected to a power supply and data logging system: the SBE 11 (or SBE 11 plus) deck unit allows real-time interfacing between the deck and the underwater unit via a conductive wire, while the submersible SBE 17 (or SBE 17 plus) SEARAM plugs directly into the underwater unit and data are downloaded on recovery of the CTD. The combination of SBE 9 and SBE 17 or SBE 11 are termed SBE 917 or SBE 911, respectively, while the combinations of SBE 9 plus and SBE 17 plus or SBE 11 plus are termed SBE 917 plus or SBE 911 plus.

Specifications

Specifications for the SBE 9 plus underwater unit are listed below:

Parameter Range Initial accuracy Resolution at 24 Hz Response time
Temperature -5 to 35°C 0.001°C 0.0002°C 0.065 sec
Conductivity 0 to 7 S m-1 0.0003 S m-1 0.00004 S m-1 0.065 sec (pumped)
Pressure 0 to full scale (1400, 2000, 4200, 6800 or 10500 m) 0.015% of full scale 0.001% of full scale 0.015 sec

Further details can be found in the manufacturer's specification sheet.

Chelsea Technologies Group Aquatracka MKIII fluorometer

The Chelsea Technologies Group Aquatracka MKIII is a logarithmic response fluorometer. Filters are available to enable the instrument to measure chlorophyll, rhodamine, fluorescein and turbidity.

It uses a pulsed (5.5 Hz) xenon light source discharging along two signal paths to eliminate variations in the flashlamp intensity. The reference path measures the intensity of the light source whilst the signal path measures the intensity of the light emitted from the specimen under test. The reference signal and the emitted light signals are then applied to a ratiometric circuit. In this circuit, the ratio of returned signal to reference signal is computed and scaled logarithmically to achieve a wide dynamic range. The logarithmic conversion accuracy is maintained at better than one percent of the reading over the full output range of the instrument.

Two variants of the instrument are available, both manufactured in titanium, capable of operating in depths from shallow water down to 2000 m and 6000 m respectively. The optical characteristics of the instrument in its different detection modes are visible below:

Excitation Chlorophyll a Rhodamine Fluorescein Turbidity
Wavelength (nm) 430 500 485 440*
Bandwidth (nm) 105 70 22 80*
Emission Chlorophyll a Rhodamine Fluorescein Turbidity
Wavelength (nm) 685 590 530 440*
Bandwidth (nm) 30 45 30 80*

* The wavelengths for the turbidity filters are customer selectable but must be in the range 400 to 700 nm. The same wavelength is used in the excitation path and the emission path.

The instrument measures chlorophyll a, rhodamine and fluorescein with a concentration range of 0.01 µg l-1 to 100 µg l-1. The concentration range for turbidity is 0.01 to 100 FTU (other wavelengths are available on request).

The instrument accuracy is ± 0.02 µg l-1 (or ± 3% of the reading, whichever is greater) for chlorophyll a, rhodamine and fluorescein. The accuracy for turbidity, over a 0 - 10 FTU range, is ± 0.02 FTU (or ± 3% of the reading, whichever is greater).

Further details are available from the Aquatracka MKIII specification sheet.

Biospherical Instruments Log Quantum Cosine Irradiance Sensor QCP-2300 & QCP-2350

The QCP-2300 is a submersible cosine-collector radiometer designed to measure irradiance over Photosynthetically Active Radiation (PAR) wavelengths. It features a constant (better than ±10%) quantum response from 400 to 700 nm with the response being sharply attenuated above 700 nm and below 400 nm.

The sensor is a blue-enhanced high stability silicon photovoltaic detector with dielectric and absorbing glass filter assembly. The output is a DC voltage typically between 0 and 5 VDC that is proportional to the log of the incident irradiance.

The QCP-2300 is specifically designed for integration with 12-bit CTD systems and dataloggers requiring a limited-range of signal input.

Specifications

Wavelength 400 to 700 nm
PAR Spectral Response better than ± 10% over 400-700 nm
Cosine Directional Response ± 5% 0 to 65°; ± 10% 0 to 85°
Noise level < 1 mV
Temperature Range -2 to 35 °C
Depth Range (standard) 1000 m

Further details can be found in the manufacturer's manual.

.

Tritech PA-200 altimeter

Digital precision altimeter with 200 kHz signal giving highly accurate height off seabed and subsea distance measurements. Operates effectively between -10 °C and 40 °C at heights up to 50 m above the seabed. Standard depth rating is 4000 m, with 700 and 6800 m options. This term can be used for either the MKI or MKII version, which will be identified elsewhere in the supporting metadata.

For more information, please see these documents:

https://www.bodc.ac.uk/data/documents/nodb/pdf/pa200_pa500-altimeters.pdf

https://www.bodc.ac.uk/data/documents/nodb/pdf/pa200_pa500_MKII-altimeters.pdf

Paroscientific Absolute Pressure Transducers Series 3000 and 4000

Paroscientific Series 3000 and 4000 pressure transducers use a Digiquartz pressure sensor to provide high accuracy and precision data. The sensor comprises a quartz crystal resonator that responds to pressure-induced stress, and temperature is measured for thermal compensation of the calculated pressure.

The 3000 series of transducers includes one model, the 31K-101, whereas the 4000 series includes several models, listed in the table below. All transducers exhibit repeatability of better than ±0.01% full pressure scale, hysteresis of better than ±0.02% full scale and acceleration sensitivity of ±0.008% full scale /g (three axis average). Pressure resolution is better than 0.0001% and accuracy is typically 0.01% over a broad range of temperatures.

Differences between the models lie in their pressure and operating temperature ranges, as detailed below:

Model Max. pressure (psia) Max. pressure (MPa) Temperature range (°C)
31K-101 1000 6.9 -54 to 107
42K-101 2000 13.8 0 to 125
43K-101 3000 20.7 0 to 125
46K-101 6000 41.4 0 to 125
410K-101 10000 68.9 0 to 125
415K-101 15000 103 0 to 50
420K-101 20000 138 0 to 50
430K-101 30000 207 0 to 50
440K-101 40000 276 0 to 50

Further details can be found in the manufacturer's specification sheet.

WETLabs C-Star transmissometer

This instrument is designed to measure beam transmittance by submersion or with an optional flow tube for pumped applications. It can be used in profiles, moorings or as part of an underway system.

Two models are available, a 25 cm pathlength, which can be built in aluminum or co-polymer, and a 10 cm pathlength with a plastic housing. Both have an analog output, but a digital model is also available.

This instrument has been updated to provide a high resolution RS232 data output, while maintaining the same design and characteristics.

Specifications

Pathlength 10 or 25 cm
Wavelength 370, 470, 530 or 660 nm
Bandwidth

~ 20 nm for wavelengths of 470, 530 and 660 nm

~ 10 to 12 nm for a wavelength of 370 nm

Temperature error 0.02 % full scale °C-1
Temperature range 0 to 30°C
Rated depth

600 m (plastic housing)

6000 m (aluminum housing)

Further details are available in the manufacturer's specification sheet or user guide.

BODC Processing

The CTD data for cruise JR20130317 (JR281) were supplied to BODC as 111 MStar files and converted to the BODC internal format (netCDF).

During transfer the originator's variables were mapped to unique BODC parameter codes. The following table shows the parameter mapping.

Originator's variable Units Description BODC Code Units Comments
press decibars Pressure (spatial co-ordinate) exerted by the water body by profiling pressure sensor and corrected to read zero at sea level. PRESPR01 decibars -
temp degC Temperature of the water body by CTD TEMPST01 degC -
cond mS/cm Electrical conductivity of the water body by in-situ conductivity cell and calibration against independent measurements CNCLCCI1 S/m Converted (/10)
altimeter m Height above bed in the water body AHSFZZ01 m -
oxygen µmol/kg Concentration of oxygen {O2} per unit volume of the water body [dissolved phase] by Sea-Bird SBE 43 sensor and calibration against sample data DOXYSC01 µmol l-1 Conversion by BODC to µmol l-1 using TOKGPR01
fluor µg/l Concentration of chlorophyll-a {chl-a} per unit volume of the water body [particulate phase] by in-situ chlorophyll fluorometer and manufacturer's calibration applied CPHLPM01 mg/m3 ug/l=mg/m3
trans % Transmittance (red light wavelength) per 25cm of the water body by 25cm path length red light transmissometer POPTDR01 % -
psal pss-78 Practical salinity of the water body by CTD and computation using UNESCO 1983 algorithm PSALST01 pss-78 Calculated from calibrated conductivity measurements, by the originator
depth m Depth below surface (sampling event start) of the water body by profiling pressure sensor and conversion to depth using unspecified algorithm. DEPHPRST m -
par number Downwelling vector irradiance as photons (PAR wavelengths) in the water body by cosine-collector radiometer IRRDUV01 - -
- - Saturation of oxygen {o2} in the water body [dissolved plus reactive particulate phase] OXYSZZ01 % Derived by BODC using DOXYSC01, TEMPST01 and PSALST01
- - Potential temperature of the water body by computation using unesco 1983 algorithm POTMCV01 °C Derived by BODC using TEMPST01, PSALST01 and PRESPR01.
- - Sigma-theta of the water body by CTD and computation from salinity and potential temperature using UNESCO algorithm SIGTPR01 kg m-3 Derived by BODC using POTMCV01, PSALST01 and PRESPR01
- - Conversion factor (volume to mass) for the water body by CTD and computation of density (in-situ potential temperature surface pressure) reciprocal from pressure, temperature and salinity TOKGPR01 l kg-1 Derived by BODC using SIGTPR01

Following transfer the data were screened using BODC in-house visualisation software. Suspect data values were assigned the appropriate BODC data quality flag. Missing data values, where present, were changed to the missing data value and assigned a BODC data quality flag

Originator's Data Processing

Sampling strategy

A Conductivity-Temperature-Depth (CTD) unit was used on cruise JR201303171 (JR281) to produce vertical profiles of the temperature and salinity of the water column. Three repeat hydrographic sections were occupied: one along the ridge crest of the North Scotia Ridge; one from South Georgia, down to the Weddell Sea (a subset of the WOCE section A23), and one across Drake Passage (WOCE section SR1b) Combined, this consisted of 111 CTD stations.

Data Acquisition and Initial Processing

The CTD data processing followed the methods used on previous SR1b and other NOC MPOC cruises, using the mexec software suite. The initial SeaBird data conversion, align, and cell thermal mass corrections were performed using SBE Data Processing, Version 7.22.2 software.

The processed data, together with the raw Sea-Bird, configuration and bottle files, were supplied to BODC for banking.

See the cruise report for more details.


Project Information

Diapycnal and Isopycnal Mixing Experiment in the Southern Ocean (DIMES) project document

DIMES is a US/UK field program aimed at measuring diapycnal and isopycnal mixing in the Southern Ocean, along the tilting isopycnals of the Antarctic Circumpolar Current.

The Meridional Overturning Circulation (MOC) of the ocean is a critical regulator of the Earth's climate processes. Climate models are highly sensitive to the representation of mixing processes in the southern limb of the MOC, within the Southern Ocean, although the lack of extensive in situ observations of Southern Ocean mixing processes has made evaluation of mixing somewhat difficult. Theories and models of the Southern Ocean circulation have been built on the premise of adiabatic flow in the ocean interior, with diabatic processes confined to the upper-ocean mixed layer. Interior diapycnal mixing has often been assumed to be small, but a few recent studies have suggested that diapycnal mixing might be large in some locations, particularly over rough bathymetry. Depending on its extent, this interior diapycnal mixing could significantly affect the overall energetics and property balances for the Southern Ocean and in turn for the global ocean. The goals of DIMES are to obtain measurements that will help us quantify both along-isopycnal eddy-driven mixing and cross-isopycnal interior mixing.

DIMES includes tracer release, isopycnal following RAFOS floats, microstructure measurements, shearmeter floats, EM-APEX floats, a mooring array in Drake Passage, hydrographic observations, inverse modeling, and analysis of altimetry and numerical model output.

DIMES is sponsored by the National Science Foundation (U.S.), Natural Environment Research Council (U.K) and British Antarctic Survey (U.K.)

For more information please see the official project website at DIMES


Data Activity or Cruise Information

Cruise

Cruise Name JR20130317 (JR252B, JR272B, JR273A, JR281, UKD-4)
Departure Date 2013-03-17
Arrival Date 2013-04-27
Principal Scientist(s)Jean-Baptiste Sallee (British Antarctic Survey)
Ship RRS James Clark Ross

Complete Cruise Metadata Report is available here


Fixed Station Information


No Fixed Station Information held for the Series


BODC Quality Control Flags

The following single character qualifying flags may be associated with one or more individual parameters with a data cycle:

Flag Description
Blank Unqualified
< Below detection limit
> In excess of quoted value
A Taxonomic flag for affinis (aff.)
B Beginning of CTD Down/Up Cast
C Taxonomic flag for confer (cf.)
D Thermometric depth
E End of CTD Down/Up Cast
G Non-taxonomic biological characteristic uncertainty
H Extrapolated value
I Taxonomic flag for single species (sp.)
K Improbable value - unknown quality control source
L Improbable value - originator's quality control
M Improbable value - BODC quality control
N Null value
O Improbable value - user quality control
P Trace/calm
Q Indeterminate
R Replacement value
S Estimated value
T Interpolated value
U Uncalibrated
W Control value
X Excessive difference

SeaDataNet Quality Control Flags

The following single character qualifying flags may be associated with one or more individual parameters with a data cycle:

Flag Description
0 no quality control
1 good value
2 probably good value
3 probably bad value
4 bad value
5 changed value
6 value below detection
7 value in excess
8 interpolated value
9 missing value
A value phenomenon uncertain
B nominal value
Q value below limit of quantification