Metadata Report for BODC Series Reference Number 1745595


Metadata Summary

Data Description

Data Category CTD or STD cast
Instrument Type
NameCategories
Sea-Bird SBE 43 Dissolved Oxygen Sensor  dissolved gas sensors
Sea-Bird SBE 911plus CTD  CTD; water temperature sensor; salinity sensor
Tritech PA-200 Altimeter  altimeters
WETLabs C-Star transmissometer  transmissometers
Biospherical QCD-905L underwater PAR sensor  radiometers
Sea-Bird SBE 3plus (SBE 3P) temperature sensor  water temperature sensor
Sea-Bird SBE 4C conductivity sensor  salinity sensor
Chelsea Technologies Group Aquatracka III fluorometer  fluorometers
Paroscientific Digiquartz depth sensors  water pressure sensors
Instrument Mounting research vessel
Originating Country United Kingdom
Originator Dr Sally Thorpe
Originating Organization British Antarctic Survey
Processing Status banked
Project(s) -
 

Data Identifiers

Originator's Identifier JR188_CTD006
BODC Series Reference 1745595
 

Time Co-ordinates(UT)

Start Time (yyyy-mm-dd hh:mm) 2009-01-01 20:40
End Time (yyyy-mm-dd hh:mm) -
Nominal Cycle Interval 2.0 decibars
 

Spatial Co-ordinates

Latitude 53.96172 S ( 53° 57.7' S )
Longitude 38.52663 W ( 38° 31.6' W )
Positional Uncertainty 0.0 to 0.01 n.miles
Minimum Sensor Depth 1.0 m
Maximum Sensor Depth 147.0 m
Minimum Sensor Height 15.78 m
Maximum Sensor Height 161.79 m
Sea Floor Depth 162.79 m
Sensor Distribution Variable common depth - All sensors are grouped effectively at the same depth, but this depth varies significantly during the series
Sensor Depth Datum Instantaneous - Depth measured below water line or instantaneous water body surface
Sea Floor Depth Datum Chart reference - Depth extracted from available chart
 

Parameters

BODC CODE Rank Units Short Title Title
ACYCAA01 1 Dimensionless Record_No Sequence number
CNDCST01 1 Siemens per metre CTDCond Electrical conductivity of the water body by CTD
CPHLPS01 1 Milligrams per cubic metre chl-a_water_ISfluor_sampcal Concentration of chlorophyll-a {chl-a CAS 479-61-8} per unit volume of the water body [particulate >unknown phase] by in-situ chlorophyll fluorometer and calibration against sample data
DOXYSU01 1 Micromoles per litre WC_dissO2_uncalib Concentration of oxygen {O2 CAS 7782-44-7} per unit volume of the water body [dissolved plus reactive particulate phase] by Sea-Bird SBE 43 sensor and no calibration against sample data
IRRDUV01 1 MicroEinsteins per square metre per second SubsurVPAR Downwelling vector irradiance as photons (PAR wavelengths) in the water body by cosine-collector radiometer
OXYSZZ01 1 Percent O2Sat Saturation of oxygen {O2 CAS 7782-44-7} in the water body [dissolved plus reactive particulate phase]
POPTDR01 1 Percent Trans_Red_25cm Transmittance (red light wavelength) per 25cm of the water body by 25cm path length red light transmissometer
POTMCV01 1 Degrees Celsius WC_Potemp Potential temperature of the water body by computation using UNESCO 1983 algorithm
PRESPR01 1 Decibars Pres_Z Pressure (spatial co-ordinate) exerted by the water body by profiling pressure sensor and corrected to read zero at sea level
PSALST01 1 Dimensionless P_sal_CTD Practical salinity of the water body by CTD and computation using UNESCO 1983 algorithm
SIGTPR01 1 Kilograms per cubic metre SigTheta Sigma-theta of the water body by CTD and computation from salinity and potential temperature using UNESCO algorithm
TEMPST01 1 Degrees Celsius WC_temp_CTD Temperature of the water body by CTD or STD
 

Definition of Rank

  • Rank 1 is a one-dimensional parameter
  • Rank 2 is a two-dimensional parameter
  • Rank 0 is a one-dimensional parameter describing the second dimension of a two-dimensional parameter (e.g. bin depths for moored ADCP data)

Problem Reports

No Problem Report Found in the Database


Data Access Policy

Open Data supplied by Natural Environment Research Council (NERC)

You must always use the following attribution statement to acknowledge the source of the information: "Contains data supplied by Natural Environment Research Council."


Narrative Documents

Sea-Bird Dissolved Oxygen Sensor SBE 43 and SBE 43F

The SBE 43 is a dissolved oxygen sensor designed for marine applications. It incorporates a high-performance Clark polarographic membrane with a pump that continuously plumbs water through it, preventing algal growth and the development of anoxic conditions when the sensor is taking measurements.

Two configurations are available: SBE 43 produces a voltage output and can be incorporated with any Sea-Bird CTD that accepts input from a 0-5 volt auxiliary sensor, while the SBE 43F produces a frequency output and can be integrated with an SBE 52-MP (Moored Profiler CTD) or used for OEM applications. The specifications below are common to both.

Specifications

Housing Plastic or titanium
Membrane

0.5 mil- fast response, typical for profile applications

1 mil- slower response, typical for moored applications

Depth rating

600 m (plastic) or 7000 m (titanium)

10500 m titanium housing available on request

Measurement range 120% of surface saturation
Initial accuracy 2% of saturation
Typical stability 0.5% per 1000 h

Further details can be found in the manufacturer's specification sheet .

Instrument Description for JR20081229 (JR188) CTD

CTD Unit and Auxiliary Sensors

The CTD unit comprised a Sea-Bird Electronics (SBE) 9 plus underwater unit, an SBE 11 plus deck unit, a BAS 24-way frame and 24x12 L OTE Water Samplers; all of which were mounted on a stainless steel 24-way CTD frame. Attached to the CTD were two SBE 3P temperature sensors, two SBE 4C conductivity sensors, one Paroscientific Digiquartz pressure sensor, one SBE 43 dissolved oxygen sensor, one CTG Aquatracka MKIII fluorometer and one CTG WETLabs C-Star transmissometer an a Biospherical QCD-905L underwater PAR sensor. An additional independent SBE35 temperature sensor was attached to the frame to perform observations each time a bottle is fired.

Sensor unit Model Serial number Full specification Calibration dates (YYYY/MM/DD) Comments
CTD underwater unit SBE 9 plus   SBE 9 plus    
CTD deck unit SBE 11 plus        
Pressure sensor Paroscientific Digiquartz 0541-75429 Paroscientific Digiquartz 18/07/2007  
Temperature sensor SBE 3P 4302 SBE 03P 18/07/2007  
Temperature sensor SBE 3P 4235 SBE 03P 20/07/2007  
Conductivity sensor SBE 4C 2875 SBE 04C 18/07/2007 cpcor= -9.57x10 -8
Conductivity sensor SBE 4C 2813 SBE 04C 17/07/2007 cpcor= -9.57x10 -8
Dissolved oxygen sensor SBE 43 0676 SBE 43 03/06/2006  
Irradiance sensor (DWIRR) Biospherical QCL PAR sensor 72354 Biospherical QCP PAR sensor 26/07/2007 Measuring downwelling irradiance
Fluorometer Chelsea Aquatracka III 088-249 Chelsea MKII Aquatracka 13/09/2007  
Transmissometer WETLabs C-Star - 25 cm path CST-527DR Alphatracka MKII 14/08/2007  

Sea-Bird Electronics SBE 911 and SBE 917 series CTD profilers

The SBE 911 and SBE 917 series of conductivity-temperature-depth (CTD) units are used to collect hydrographic profiles, including temperature, conductivity and pressure as standard. Each profiler consists of an underwater unit and deck unit or SEARAM. Auxiliary sensors, such as fluorometers, dissolved oxygen sensors and transmissometers, and carousel water samplers are commonly added to the underwater unit.

Underwater unit

The CTD underwater unit (SBE 9 or SBE 9 plus ) comprises a protective cage (usually with a carousel water sampler), including a main pressure housing containing power supplies, acquisition electronics, telemetry circuitry, and a suite of modular sensors. The original SBE 9 incorporated Sea-Bird's standard modular SBE 3 temperature sensor and SBE 4 conductivity sensor, and a Paroscientific Digiquartz pressure sensor. The conductivity cell was connected to a pump-fed plastic tubing circuit that could include auxiliary sensors. Each SBE 9 unit was custom built to individual specification. The SBE 9 was replaced in 1997 by an off-the-shelf version, termed the SBE 9 plus , that incorporated the SBE 3 plus (or SBE 3P) temperature sensor, SBE 4C conductivity sensor and a Paroscientific Digiquartz pressure sensor. Sensors could be connected to a pump-fed plastic tubing circuit or stand-alone.

Temperature, conductivity and pressure sensors

The conductivity, temperature, and pressure sensors supplied with Sea-Bird CTD systems have outputs in the form of variable frequencies, which are measured using high-speed parallel counters. The resulting count totals are converted to numeric representations of the original frequencies, which bear a direct relationship to temperature, conductivity or pressure. Sampling frequencies for these sensors are typically set at 24 Hz.

The temperature sensing element is a glass-coated thermistor bead, pressure-protected inside a stainless steel tube, while the conductivity sensing element is a cylindrical, flow-through, borosilicate glass cell with three internal platinum electrodes. Thermistor resistance or conductivity cell resistance, respectively, is the controlling element in an optimized Wien Bridge oscillator circuit, which produces a frequency output that can be converted to a temperature or conductivity reading. These sensors are available with depth ratings of 6800 m (aluminium housing) or 10500 m (titanium housing). The Paroscientific Digiquartz pressure sensor comprises a quartz crystal resonator that responds to pressure-induced stress, and temperature is measured for thermal compensation of the calculated pressure.

Additional sensors

Optional sensors for dissolved oxygen, pH, light transmission, fluorescence and others do not require the very high levels of resolution needed in the primary CTD channels, nor do these sensors generally offer variable frequency outputs. Accordingly, signals from the auxiliary sensors are acquired using a conventional voltage-input multiplexed A/D converter (optional). Some Sea-Bird CTDs use a strain gauge pressure sensor (Senso-Metrics) in which case their pressure output data is in the same form as that from the auxiliary sensors as described above.

Deck unit or SEARAM

Each underwater unit is connected to a power supply and data logging system: the SBE 11 (or SBE 11 plus ) deck unit allows real-time interfacing between the deck and the underwater unit via a conductive wire, while the submersible SBE 17 (or SBE 17 plus ) SEARAM plugs directly into the underwater unit and data are downloaded on recovery of the CTD. The combination of SBE 9 and SBE 17 or SBE 11 are termed SBE 917 or SBE 911, respectively, while the combinations of SBE 9 plus and SBE 17 plus or SBE 11 plus are termed SBE 917 plus or SBE 911 plus .

Specifications

Specifications for the SBE 9 plus underwater unit are listed below:

Parameter Range Initial accuracy Resolution at 24 Hz Response time
Temperature -5 to 35°C 0.001°C 0.0002°C 0.065 sec
Conductivity 0 to 7 S m -1 0.0003 S m -1 0.00004 S m -1 0.065 sec (pumped)
Pressure 0 to full scale (1400, 2000, 4200, 6800 or 10500 m) 0.015% of full scale 0.001% of full scale 0.015 sec

Further details can be found in the manufacturer's specification sheet .

Chelsea Technologies Group Aquatracka MKIII fluorometer

The Chelsea Technologies Group Aquatracka MKIII is a logarithmic response fluorometer. Filters are available to enable the instrument to measure chlorophyll, rhodamine, fluorescein and turbidity.

It uses a pulsed (5.5 Hz) xenon light source discharging along two signal paths to eliminate variations in the flashlamp intensity. The reference path measures the intensity of the light source whilst the signal path measures the intensity of the light emitted from the specimen under test. The reference signal and the emitted light signals are then applied to a ratiometric circuit. In this circuit, the ratio of returned signal to reference signal is computed and scaled logarithmically to achieve a wide dynamic range. The logarithmic conversion accuracy is maintained at better than one percent of the reading over the full output range of the instrument.

Two variants of the instrument are available, both manufactured in titanium, capable of operating in depths from shallow water down to 2000 m and 6000 m respectively. The optical characteristics of the instrument in its different detection modes are visible below:

Excitation Chlorophyll a Rhodamine Fluorescein Turbidity
Wavelength (nm) 430 500 485 440 *
Bandwidth (nm) 105 70 22 80 *
Emission Chlorophyll a Rhodamine Fluorescein Turbidity
Wavelength (nm) 685 590 530 440 *
Bandwidth (nm) 30 45 30 80 *

* The wavelengths for the turbidity filters are customer selectable but must be in the range 400 to 700 nm. The same wavelength is used in the excitation path and the emission path.

The instrument measures chlorophyll a, rhodamine and fluorescein with a concentration range of 0.01 µg l -1 to 100 µg l -1 . The concentration range for turbidity is 0.01 to 100 FTU (other wavelengths are available on request).

The instrument accuracy is ± 0.02 µg l -1 (or ± 3% of the reading, whichever is greater) for chlorophyll a, rhodamine and fluorescein. The accuracy for turbidity, over a 0 - 10 FTU range, is ± 0.02 FTU (or ± 3% of the reading, whichever is greater).

Further details are available from the Aquatracka MKIII specification sheet .

Biospherical Instruments Log Quantum Cosine Irradiance Sensor QCD-905L

The QCD-905L is a submersible radiometer designed to measure irradiance over Photosynthetically Active Radiation (PAR) wavelengths (400-700 nm). It features a cosine directional response when fully immersed in water.

The sensor is a blue-enhanced high stability silicon photovoltaic detector with dielectric and absorbing glass filter assembly, and produces a logarithmic output. Normal output range is -1 to 6 volts with 1 volt per decade. Typically, the instrument outputs 5 volts for full sunlight and has a minimum output of 0.001% full sunlight, where typical noon solar irradiance is 1.5 to 2 x 10 17 quanta cm -2 s -1 . The instrument can be calibrated with constants for µE cm -2 s -1 or quanta cm -2 s -1 .

The QCD-905L can be coupled to a fixed range data acquisition system like a CTD (Conductivity-Temperature-Depth) profiler or current meter. It has an aluminium and PET housing, and a depth rating of 7000 m.

Specifications

Wavelength 400 to 700 nm
Output range -1 to 6 V, with 1 V decade -1
Operating temperature -2 to 35°C
Depth range 0 - 7000 m

Further details can be found in the manufacturer's manual .

Tritech Digital Precision Altimeter PA200

This altimeter is a sonar ranging device that gives the height above the sea bed when mounted vertically. When mounted in any other attitude the sensor provides a subsea distance. It can be configured to operate on its own or under control from an external unit and can be supplied with simultaneous analogue and digital outputs, allowing them to interface to PC devices, data loggers, telemetry systems and multiplexers.

These instruments can be supplied with different housings, stainless steel, plastic and aluminum, which will limit the depth rating. There are three models available: the PA200-20S, PA200-10L and the PA500-6S, whose transducer options differ slightly.

Specifications

Transducer options PA200-20S P200-10L PA500-6S
Frequency (kHz) 200 200 500
Beamwidth (°) 20 Conical 10 included conical beam 6 Conical
Operating range

1 to 100 m

0.7 to 50 m

-

0.3 to 50 m

0.1 to 10 m

Common specifications are presented below

Digital resolution 1 mm
Analogue resolution 0.25% of range
Depth rating 700 , 2000, 4000 and 6800 m
Operating temperature -10 to 40°C

Further details can be found in the manufacturer's specification sheet .

WETLabs C-Star transmissometer

This instrument is designed to measure beam transmittance by submersion or with an optional flow tube for pumped applications. It can be used in profiles, moorings or as part of an underway system.

Two models are available, a 25 cm pathlength, which can be built in aluminum or co-polymer, and a 10 cm pathlength with a plastic housing. Both have an analog output, but a digital model is also available.

This instrument has been updated to provide a high resolution RS232 data output, while maintaining the same design and characteristics.

Specifications

Pathlength 10 or 25 cm
Wavelength 370, 470, 530 or 660 nm
Bandwidth

~ 20 nm for wavelengths of 470, 530 and 660 nm

~ 10 to 12 nm for a wavelength of 370 nm

Temperature error 0.02 % full scale °C -1
Temperature range 0 to 30°C
Rated depth

600 m (plastic housing)

6000 m (aluminum housing)

Further details are available in the manufacturer's specification sheet or user guide .

Originator's processing document for JR20081229 (JR188) CTD data

Sampling strategy

A total of 15 CTD casts were performed during JR20081229 (JR188), which sailed from Stanley (Falkland Islands) on 29 December 2008 and docked in Stanley (Falkland Islands) on 06 January 2009.

Data Processing

CTD data were collected at 24Hz and logged via the deck unit to a PC running Seasave Win32 version 5.30b (Sea-Bird Electronics, Inc.), which allows real-time viewing of the data. The procedure was to start data logging, deploy the CTD, then stop the instrument at 10m wire out, where the CTD package was left for at least two minutes to allow the seawater-activated pumps to switch on and the sensors to equilibrate with ambient conditions.

The following processing was performed by the Originator using the SBE Data Processing software (Seasave Version 5.30b):

The originator then proceeded to process the data further in Matlab using scripts provided by Hugh venables. The procedures included:

Processing by BODC of RRS James Clark Ross JR20081229 (JR188) CTD data

The files were processed at the British Antarctic Survey and were sent to BODC in matlab and csv formats. The following parameters were sent: time, press, primary and secondary temperature, salinity, conductivity, potemp1, potemp2, sigma0, sigma2 and sigma4, fluorescence, oxygen, par and transmittance but not all were transferred as they were either not relevant, or it was not clear how the originator obtained them.

In addition to the raw CTD data, BODC were provided with the intermediate versions created at by the different processing procedures. The fully processed CTD data binned to 2 dbar downcast bins were then reformatted to BODC's internal NetCDF format. The following table shows the mapping of the originator's variables to the appropriate BODC parameter codes:

Originator's Variable Units Description BODC Parameter Code Units Comment
press db Pressure (spatial co-ordinate) exerted by the water body by profiling pressure sensor and corrected to read zero at sea level PRESPR01 Decibars -
temp1 °C Temperature of the water body by CTD or STD TEMPST01 °C -
cond1 mS cm -1 Electrical conductivity of the water body by CTD CNDCST01 S m -1 *0.1
salin1 PSU Practical salinity of the water body by CTD and computation using UNESCO 1983 algorithm PSALST01 Dimensionless derived from temp1 and cond1
oxy_ml_l ml l -1 Concentration of oxygen {O2} per unit volume of the water body [dissolved phase] by Sea-Bird SBE 43 sensor and no calibration against sample data DOXYSU01 µ mol l -1 *44.66
fluor_ug_l µ g l -1 Concentration of chlorophyll-a {chl-a} per unit volume of the water body [particulate phase] by in-situ chlorophyll fluorometer and calibration against sample data CPHLPS01 mg m -3 µ g l -1 = mg m -3
trans % Transmittance (red light wavelength) per 25cm of the water body by 25cm path length red light transmissometer POPTDR01 %  
    Potential temperature of the water body by computation using UNESCO 1983 algorithm POTMCV01 °C Derived from TEMPPR01, PSALST01 and PRESPR01
    Sigma-theta of the water body by CTD and computation from salinity and potential temperature using UNESCO algorithm SIGTPR01 kg m -3 Derived from POTMCV01, PSALST01 and PRESPR01
    Saturation of oxygen {O2} in the water body [dissolved plus reactive particulate phase] OXYSZZ01 % Derived from TEMPPR01, PSALST01 and DOXYSU01

Additional variables (secondary temperature, salinity, conductivity, density, potential temperature) are avaiable upon request.

The reformatted data were visualised using the in-house EDSERPLO software. Suspect data were marked by adding an appropriate quality control flag, and missing data by setting the data to an appropriate value and applying the quality control flag.


Project Information


No Project Information held for the Series

Data Activity or Cruise Information

Cruise

Cruise Name JR20081224 (JR188)
Departure Date 2008-12-24
Arrival Date 2009-01-06
Principal Scientist(s)Claire Waluda (British Antarctic Survey)
Ship RRS James Clark Ross

Complete Cruise Metadata Report is available here


Fixed Station Information


No Fixed Station Information held for the Series


BODC Quality Control Flags

The following single character qualifying flags may be associated with one or more individual parameters with a data cycle:

Flag Description
Blank Unqualified
< Below detection limit
> In excess of quoted value
A Taxonomic flag for affinis (aff.)
B Beginning of CTD Down/Up Cast
C Taxonomic flag for confer (cf.)
D Thermometric depth
E End of CTD Down/Up Cast
G Non-taxonomic biological characteristic uncertainty
H Extrapolated value
I Taxonomic flag for single species (sp.)
K Improbable value - unknown quality control source
L Improbable value - originator's quality control
M Improbable value - BODC quality control
N Null value
O Improbable value - user quality control
P Trace/calm
Q Indeterminate
R Replacement value
S Estimated value
T Interpolated value
U Uncalibrated
W Control value
X Excessive difference

SeaDataNet Quality Control Flags

The following single character qualifying flags may be associated with one or more individual parameters with a data cycle:

Flag Description
0 no quality control
1 good value
2 probably good value
3 probably bad value
4 bad value
5 changed value
6 value below detection
7 value in excess
8 interpolated value
9 missing value
A value phenomenon uncertain