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Metadata Report for BODC Series Reference Number 2229157


Metadata Summary

Data Description

Data Category CTD or STD cast
Instrument Type
NameCategories
Sea-Bird SBE 43 Dissolved Oxygen Sensor  dissolved gas sensors
Sea-Bird SBE 911plus CTD  CTD; water temperature sensor; salinity sensor
Seapoint Turbidity Meter  optical backscatter sensors
WET Labs {Sea-Bird WETLabs} C-Star transmissometer  transmissometers
Sea-Bird SBE 3plus (SBE 3P) temperature sensor  water temperature sensor
Sea-Bird SBE 4C conductivity sensor  salinity sensor
Paroscientific Digiquartz depth sensors  water pressure sensors
WET Labs {Sea-Bird WETLabs} ECO FL(RT)D fluorometer  fluorometers
Instrument Mounting lowered unmanned submersible
Originating Country United States
Originator Dr Ben Twining
Originating Organization Bigelow Laboratory for Ocean Sciences
Processing Status QC in progress
Online delivery of data Download not available
Project(s) GEOTRACES
 

Data Identifiers

Originator's Identifier GP17_20221211.1900.001
BODC Series Reference 2229157
 

Time Co-ordinates(UT)

Start Time (yyyy-mm-dd hh:mm) 2022-12-11 19:27
End Time (yyyy-mm-dd hh:mm) -
Nominal Cycle Interval 2.0 decibars
 

Spatial Co-ordinates

Latitude 32.49995 S ( 32° 30.0' S )
Longitude 150.00128 W ( 150° 0.1' W )
Positional Uncertainty Unspecified
Minimum Sensor or Sampling Depth 0.0 m
Maximum Sensor or Sampling Depth 1251.34 m
Minimum Sensor or Sampling Height 3890.26 m
Maximum Sensor or Sampling Height 5141.6 m
Sea Floor Depth 5141.6 m
Sea Floor Depth Source GEBCO2401
Sensor or Sampling Distribution Variable common depth - All sensors are grouped effectively at the same depth, but this depth varies significantly during the series
Sensor or Sampling Depth Datum Instantaneous - Depth measured below water line or instantaneous water body surface
Sea Floor Depth Datum Unspecified -
 

Parameters

BODC CODERankUnitsTitle
ACYCAA011DimensionlessSequence number
DOXYSCKG1Micromoles per kilogramConcentration of oxygen {O2 CAS 7782-44-7} per unit mass of the water body [dissolved plus reactive particulate phase] by Sea-Bird SBE 43 sensor and calibration against sample data
FVLTZZ011VoltsRaw signal (voltage) of instrument output by in-situ chlorophyll fluorometer
PRESPR011DecibarsPressure (spatial coordinate) exerted by the water body by profiling pressure sensor and correction to read zero at sea level
PSALCC011DimensionlessPractical salinity of the water body by CTD and computation using UNESCO 1983 algorithm and calibration against independent measurements
TEMPST011Degrees CelsiusTemperature of the water body by CTD or STD
TVLTZR011VoltsRaw signal (voltage) of instrument output by red light transmissometer

Definition of Rank

  • Rank 1 is a one-dimensional parameter
  • Rank 2 is a two-dimensional parameter
  • Rank 0 is a one-dimensional parameter describing the second dimension of a two-dimensional parameter (e.g. bin depths for moored ADCP data)

Problem Reports

No Problem Report Found in the Database


Data Access Policy

GEOTRACES - data access conditions

Access to this data is currently restricted and it is not available via BODC's normal delivery mechanisms.

GEOTRACES data are published via the GEOTRACES IDP, available at:


Narrative Documents

Sea-Bird Dissolved Oxygen Sensor SBE 43 and SBE 43F

The SBE 43 is a dissolved oxygen sensor designed for marine applications. It incorporates a high-performance Clark polarographic membrane with a pump that continuously plumbs water through it, preventing algal growth and the development of anoxic conditions when the sensor is taking measurements.

Two configurations are available: SBE 43 produces a voltage output and can be incorporated with any Sea-Bird CTD that accepts input from a 0-5 volt auxiliary sensor, while the SBE 43F produces a frequency output and can be integrated with an SBE 52-MP (Moored Profiler CTD) or used for OEM applications. The specifications below are common to both.

Specifications

Housing Plastic or titanium
Membrane

0.5 mil- fast response, typical for profile applications

1 mil- slower response, typical for moored applications

Depth rating

600 m (plastic) or 7000 m (titanium)

10500 m titanium housing available on request

Measurement range 120% of surface saturation
Initial accuracy 2% of saturation
Typical stability 0.5% per 1000 h

Further details can be found in the manufacturer's specification sheet.

RR2214 CTD Instrumentation

The CTD was fitted with the following sensors:

Sensor Serial Number Calibration Date Comments
Sea-Bird SBE 911plus CTD 569 - Used stations 1-38
Paroscientific Digiquartz depth sensors - 07-Dec-2021 Used stations 1-38
Sea-Bird SBE 3plus (SBE 3P) temperature sensor 34138 & 32059 01-Sep-2022 & 25-Oct-2022 Used stations 1-38
Sea-Bird SBE 4C conductivity sensor 42319 & 44537 29-Sept-2022 Used stations 1-38
Sea-Bird SBE 43 Dissolved Oxygen Sensor 430185 27-Aug-2022 Used stations 1-38
WET Labs {Sea-Bird WETLabs} C-Star transmissometer 1874DR 09-Sept-2022 Used stations 1-38
WET Labs {Sea-Bird WETLabs} ECO FL(RT)D fluorometer 4334 & 4333 07-Jan-2022 Used stations 1 & 2-38, respectively.
Seapoint Turbidity Meter - - Used stations 18-38

Some information is unavailable.

Sea-Bird Electronics SBE 911 and SBE 917 series CTD profilers

The SBE 911 and SBE 917 series of conductivity-temperature-depth (CTD) units are used to collect hydrographic profiles, including temperature, conductivity and pressure as standard. Each profiler consists of an underwater unit and deck unit or SEARAM. Auxiliary sensors, such as fluorometers, dissolved oxygen sensors and transmissometers, and carousel water samplers are commonly added to the underwater unit.

Underwater unit

The CTD underwater unit (SBE 9 or SBE 9 plus) comprises a protective cage (usually with a carousel water sampler), including a main pressure housing containing power supplies, acquisition electronics, telemetry circuitry, and a suite of modular sensors. The original SBE 9 incorporated Sea-Bird's standard modular SBE 3 temperature sensor and SBE 4 conductivity sensor, and a Paroscientific Digiquartz pressure sensor. The conductivity cell was connected to a pump-fed plastic tubing circuit that could include auxiliary sensors. Each SBE 9 unit was custom built to individual specification. The SBE 9 was replaced in 1997 by an off-the-shelf version, termed the SBE 9 plus, that incorporated the SBE 3 plus (or SBE 3P) temperature sensor, SBE 4C conductivity sensor and a Paroscientific Digiquartz pressure sensor. Sensors could be connected to a pump-fed plastic tubing circuit or stand-alone.

Temperature, conductivity and pressure sensors

The conductivity, temperature, and pressure sensors supplied with Sea-Bird CTD systems have outputs in the form of variable frequencies, which are measured using high-speed parallel counters. The resulting count totals are converted to numeric representations of the original frequencies, which bear a direct relationship to temperature, conductivity or pressure. Sampling frequencies for these sensors are typically set at 24 Hz.

The temperature sensing element is a glass-coated thermistor bead, pressure-protected inside a stainless steel tube, while the conductivity sensing element is a cylindrical, flow-through, borosilicate glass cell with three internal platinum electrodes. Thermistor resistance or conductivity cell resistance, respectively, is the controlling element in an optimized Wien Bridge oscillator circuit, which produces a frequency output that can be converted to a temperature or conductivity reading. These sensors are available with depth ratings of 6800 m (aluminium housing) or 10500 m (titanium housing). The Paroscientific Digiquartz pressure sensor comprises a quartz crystal resonator that responds to pressure-induced stress, and temperature is measured for thermal compensation of the calculated pressure.

Additional sensors

Optional sensors for dissolved oxygen, pH, light transmission, fluorescence and others do not require the very high levels of resolution needed in the primary CTD channels, nor do these sensors generally offer variable frequency outputs. Accordingly, signals from the auxiliary sensors are acquired using a conventional voltage-input multiplexed A/D converter (optional). Some Sea-Bird CTDs use a strain gauge pressure sensor (Senso-Metrics) in which case their pressure output data is in the same form as that from the auxiliary sensors as described above.

Deck unit or SEARAM

Each underwater unit is connected to a power supply and data logging system: the SBE 11 (or SBE 11 plus) deck unit allows real-time interfacing between the deck and the underwater unit via a conductive wire, while the submersible SBE 17 (or SBE 17 plus) SEARAM plugs directly into the underwater unit and data are downloaded on recovery of the CTD. The combination of SBE 9 and SBE 17 or SBE 11 are termed SBE 917 or SBE 911, respectively, while the combinations of SBE 9 plus and SBE 17 plus or SBE 11 plus are termed SBE 917 plus or SBE 911 plus.

Specifications

Specifications for the SBE 9 plus underwater unit are listed below:

Parameter Range Initial accuracy Resolution at 24 Hz Response time
Temperature -5 to 35°C 0.001°C 0.0002°C 0.065 sec
Conductivity 0 to 7 S m-1 0.0003 S m-1 0.00004 S m-1 0.065 sec (pumped)
Pressure 0 to full scale (1400, 2000, 4200, 6800 or 10500 m) 0.015% of full scale 0.001% of full scale 0.015 sec

Further details can be found in the manufacturer's specification sheet.

WET Labs ECO-FL (RT)D fluorometer

A single-channel fluorometer used to measure fluorescence from chlorophyll-a, CDOM, uranine, rhodamine, phycocyanin and phycoerythrin in marine environments. The (RT) in the designation signifies both an analog and RS-232 serial output with an approximate 16,300-count range. The D designation signifies this instrument is depth rated to 6000 m. This 'Real Time' instrument is able to provide continuous operation when powered. The fluorometer can measure phytoplankton chlorophyll-a concentrations in the range 0-125 ug/l, with a sensitivity of 0.02 ug/l. The instrument can operate over the temperature range 0-30 degC.

For more information, please see this document: https://www.bodc.ac.uk/data/documents/nodb/pdf/Wetlabs_datasheet-ECO-FL.pdf

Seapoint Turbidity Meter

The Seapoint Turbidity Meter detects light scattered by particles suspended in water, generating an output voltage proportional to turbidity or suspended solids. Range is selected by two digital lines which can be hard wired or microprocessor controlled, thereby choosing the appropriate range and resolution for measurement of extremely clean to very turbid waters. The offset voltage is within 1 mV of zero and requires no adjustment across gains. The optical design confines the sensing volume to within 5 cm of the sensor allowing near-bottom measurements and minimizing errant reflections in restricted spaces.

Sensor specifications, current at August 2006, are given in the table below.

Sensor Specifications

Power requirements 7 - 20 VDC, 3.5 mA avg., 6 mA pk.
Output 0 - 5.0 VDC
Output Time Constant 0.1 sec.
RMS Noise> < 1 mV
Power-up transient period < 1 sec.
Light Source Wavelength 880 nm
Sensing Distance (from windows) < 5 cm (approx.)
Linearity < 2% deviation 0 - 750 FTU

  Gain Sensitivity (mV FTU-1) Range (FTU)
Sensitivity/Range 100x
20x
5x
1x
200
40
10
2
25
125
500
**

** output is non-linear above 750 FTU.

Further details can be found in the manufacturer's specification sheet.

WETLabs C-Star transmissometer

This instrument is designed to measure beam transmittance by submersion or with an optional flow tube for pumped applications. It can be used in profiles, moorings or as part of an underway system.

Two models are available, a 25 cm pathlength, which can be built in aluminum or co-polymer, and a 10 cm pathlength with a plastic housing. Both have an analog output, but a digital model is also available.

This instrument has been updated to provide a high resolution RS232 data output, while maintaining the same design and characteristics.

Specifications

Pathlength 10 or 25 cm
Wavelength 370, 470, 530 or 660 nm
Bandwidth

~ 20 nm for wavelengths of 470, 530 and 660 nm

~ 10 to 12 nm for a wavelength of 370 nm

Temperature error 0.02 % full scale °C-1
Temperature range 0 to 30°C
Rated depth

600 m (plastic housing)

6000 m (aluminum housing)

Further details are available in the manufacturer's specification sheet or user guide.

Downcast CTD and UCCTD profiles for Cruise RR2214 (GP17)

Sampling Strategy

A total of 75 CTD and 59 UCCTD casts were carried out during cruise RR2214, on board the Roger Revelle, using a stainless steel CTD frame equipped with 36 10 L Niskin bottles and an aluminium CTD frame equipped with 24 12 L Go-Flo bottles, respectively. The cruise surveyed GEOTRACES section GP17.

Originator's Data Processing Procedures

Sensors were calibrated prior to the cruise and after the cruise was completed. Data were examined at the completion of each deployment for clean corrected sensor response and any calibration shifts. As bottle salinity and oxygen results became available, they were used to refine conductivity and oxygen sensor calibrations. Temperature, salinity and, dissolved O2 comparisons were made between down and upcasts as well as between groups of adjacent deployments. Vertical sections of measured and derived properties from sensor data were checked for consistency.

For the salinity data, additional shipboard calibrations were performed to correct sensor bias. Corrections for both pressure and temperature sensors were finalized before analyzing conductivity differences. Two independent metrics of calibration accuracy were examined. At each bottle closure, the primary and secondary conductivity were compared with each other. Each sensor was also compared to conductivity calculated from check sample salinities using CTD pressure and temperature.

For the oxygen data, additional shipboard fitting were performed to correct for the sensors non-linear response. Corrections for pressure, temperature, and conductivity sensors were finalized before analyzing dissolved oxygen data. Corrections for hysteresis are applied following Sea-Bird Application Note 64-3. The SBE43 sensor data were compared to dissolved O2 check samples taken at bottle stops by matching the downcast CTD data to the upcast trip locations along isopycnal surfaces. CTD dissolved O2 was then calculated using Clark Cell MPOD O2 sensor response model for Beckman/SensorMedics and SBE43 dissolved O2 sensors. The residual differences of bottle check value versus CTD dissolved O2 values are minimized by optimizing the PMEL DO sensor response model coefficients using the BFGSnon-linear least-squares fitting procedure.

RR2214 Cruise report

Further information can be found in the RR2214 Cruise report.

BODC Data Processing Procedures

Data were received from 73 CTD and 54 UCCTD casts in total, and were converted to the BODC internal format (a netCDF subset) and then mapped to GEOTRACES parameter names. A parameter mapping table is provided below:

Originator's Variable Originator's Units BODC Parameter Code BODC Units GEOTRACES Code GEOTRACES Units Comments
CTDOXY_UP_D_VALUE_SENSOR µmol/kg DOXYSCKG µmol/kg CTDOXY_D_CONC_SENSOR µmol/kg -
CTDSAL_UP_D_VALUE_SENSOR PSU PSALCC01 dimensionless CTDSAL_D_CONC_SENSOR PSS-78 Units are equivalent.
CTDFLUOR_UP_RAW_T_VALUE_SENSOR volts FVLTZZ01 volts CTDFLUOR_RAW_T_VALUE_SENSOR arbitrary units Units are equivalent.
CTDXMISS_UP_RAW_T_VALUE_SENSOR volts TVLTZR01 volts CTDXMISS_RAW_T_VALUE_SENSOR arbitrary units Units are equivalent.
CTDTURB_UP_RAW_T_VALUE_SENSOR FTU TURBXXXX NTU CTDTURB_T_VALUE_SENSOR NTU Units are equivalent.
CTDPRS_UP_T_VALUE_SENSOR decibar PRESPR01 decibar CTDPRS_T_VALUE_SENSOR decibar -
CTDTMP_UP_T_VALUE_SENSOR °C TEMPST01 °C CTDTMP_T_VALUE_SENSOR °C -

Following transfer the data were screened using BODC in-house visualisation software. Suspect data values were assigned the appropriate BODC data quality flag. Missing data values, where present, were changed to the missing data value and assigned a BODC data quality flag. These flags are provided in the IDP as SeaDataNet flags.


Project Information

GEOTRACES

Introduction

GEOTRACES is an international programme sponsored by SCOR which aims to improve our understanding of biogeochemical cycles and large-scale distribution of trace elements and their isotopes (TEIs) in the marine environment. The global field programme started in 2009 and will run for at least a decade. Before the official launch of GEOTRACES, fieldwork was carried out as part of the International Polar Year (IPY)(2007-2009) where 14 cruises were connected to GEOTRACES.

GEOTRACES is expected to become the largest programme to focus on the chemistry of the oceans and will improve our understanding of past, present and future distributions of TEIs and their relationships to important global processes.

This initiative was prompted by the increasing recognition that TEIs are playing a crucial role as regulators and recorders of important biogeochemical and physical processes that control the structure and productivity of marine ecosystems, the dispersion of contaminants in the marine environment, the level of greenhouse gases in the atmosphere, and global climate.

Scientific Objectives

GEOTRACES mission is: To identify processes and quantify fluxes that control the distribution of key trace elements and isotopes in the ocean, and to establish the sensitivity of these distributions to changing environmental conditions.

Three overriding goals support the GEOTRACES mission

  • Determine ocean distributions of selected TEIs at all major ocean basins
  • Evaluate the sources, sinks, and internal cycling of these TEIs and thereby characterize more completely their global biogeochemical cycles
  • Provide a baseline distribution in the Polar Regions as reference for assessing past and future changes.

These goals will be pursued through complementary research strategies, including observations, experiments and modelling.

Fieldwork

The central component of GEOTRACES fieldwork will be a series of cruises spanning all Ocean basins see map below.

BODC image

Three types of cruise are required to meet the goals set out by GEOTRACES. These are

  • Section cruises - These will measure all the key parameters (see below) over the full depth of the water column. The sections were discussed and approved by the International GEOTRACES Scientific Steering Committee at the basin workshops.
  • Process Studies - These will investigate a particular process relevant to the cycling of trace metal and isotopes. They must follow the "Criteria for Establishing GEOTRACES Process Studies" and be approved by the International GEOTRACES Scientific Steering Committee.
  • Cruises collecting GEOTRACES compliant data - These will collect some trace element or isotope data. They must follow the GEOTRACES Intercalibration and Data Management protocols

IPY-GEOTRACES

The IPY-GEOTRACES programme comprised of 14 research cruises on ships from 7 nations; Australia, Canada, France, Germany, New Zealand, Japan and Russia. The cruises will not be classified in the same way as the full GEOTRACES programme since the intercalibration protocols and data management protocols had not been established before the start of the IPY. But IPY-GEOTRACES data will still be quality controlled by GDAC and in the majority of cases verified versus Intercalibration standards or protocols.

Key parameters

The key parameters as set out by the GEOTRACES science plan are as follows: Fe, Al, Zn, Mn, Cd, Cu; 15N, 13C; 230Th, 231Pa; Pb isotopes, Nd isotopes; stored sample, particles, aerosols.

Weblink:

http://www.bodc.ac.uk/geotraces/
http://www.geotraces.org/


Data Activity or Cruise Information

Cruise

Cruise Name RR2214 (GP17, OCE)
Departure Date 2022-12-01
Arrival Date 2023-01-25
Principal Scientist(s)Benjamin S Twining (Bigelow Laboratory for Ocean Sciences), Gregory A Cutter (Old Dominion University Department of Ocean, Earth and Atmospheric Sciences), Jessica N Fitzsimmons (Texas A+M Department of Oceanography)
Ship RV Roger Revelle

Complete Cruise Metadata Report is available here


Fixed Station Information


No Fixed Station Information held for the Series


BODC Quality Control Flags

The following single character qualifying flags may be associated with one or more individual parameters with a data cycle:

Flag Description
Blank Unqualified
< Below detection limit
> In excess of quoted value
A Taxonomic flag for affinis (aff.)
B Beginning of CTD Down/Up Cast
C Taxonomic flag for confer (cf.)
D Thermometric depth
E End of CTD Down/Up Cast
G Non-taxonomic biological characteristic uncertainty
H Extrapolated value
I Taxonomic flag for single species (sp.)
K Improbable value - unknown quality control source
L Improbable value - originator's quality control
M Improbable value - BODC quality control
N Null value
O Improbable value - user quality control
P Trace/calm
Q Indeterminate
R Replacement value
S Estimated value
T Interpolated value
U Uncalibrated
W Control value
X Excessive difference

SeaDataNet Quality Control Flags

The following single character qualifying flags may be associated with one or more individual parameters with a data cycle:

Flag Description
0 no quality control
1 good value
2 probably good value
3 probably bad value
4 bad value
5 changed value
6 value below detection
7 value in excess
8 interpolated value
9 missing value
A value phenomenon uncertain
B nominal value
Q value below limit of quantification