Metadata Report for BODC Series Reference Number 896156

• Metadata Summary

• Problem Reports

• Data Access Policy

• Narrative Documents

• Project Information

• Data Activity or Cruise Information

• Fixed Station Information

• BODC Quality Flags

• SeaDataNet Quality Flags

Metadata Summary

Problem Reports

No Problem Report Found in the Database

Data quality report

The originators found after initial investigation that the secondary temperature data was noisier then the primary temperature data, and as a consequence the secondary salinity data may also be affected. BODC screened the data using in-house visualisation software and no problem was found in the secondary sensor data, therefore the data were not flagged. However, given the originator's warning, the secondary temperature and salinity data should be used with caution.

Data Access Policy

Open Data supplied by Natural Environment Research Council (NERC)

You must always use the following attribution statement to acknowledge the source of the information: "Contains data supplied by Natural Environment Research Council."

Narrative Documents

Sea-Bird Dissolved Oxygen Sensor SBE 43 and SBE 43F

The SBE 43 is a dissolved oxygen sensor designed for marine applications. It incorporates a high-performance Clark polarographic membrane with a pump that continuously plumbs water through it, preventing algal growth and the development of anoxic conditions when the sensor is taking measurements.

Two configurations are available: SBE 43 produces a voltage output and can be incorporated with any Sea-Bird CTD that accepts input from a 0-5 volt auxiliary sensor, while the SBE 43F produces a frequency output and can be integrated with an SBE 52-MP (Moored Profiler CTD) or used for OEM applications. The specifications below are common to both.

Specifications

Further details can be found in the manufacturer's specification sheet.

Instrument Description

AutoSub is an autonomous underwater vehicle (AUV) fitted with a Sea-Bird 911plus CTD system which includes two sets of conductivity and temperature sensors and a Sea-Bird SBE 42 oxygen sensor. The sensors are mounted in two separately ducted systems with sea water pumped through them at a nominally known rate if the pumps are operating correctly. Depth is measured by a Digiquartz pressure sensor. The output from the CTD sensors is recorded at a rate of 24 Hz. For further CTD configuration details see the cruise report page 36. In addition to the CTD system, other sensors fitted to the autosub vehicle included, a RDI 150 kHz ADCP looking downwards, a RDI 300 kHz ADCP looking upwards, a Kongsberg EM2000 Multibeam swath system looking upwards and an Edgetech FSAU sub-bottom profiler.

The table below details the instrumentation included on the CTD system.

Sea-Bird Electronics SBE 911 and SBE 917 series CTD profilers

The SBE 911 and SBE 917 series of conductivity-temperature-depth (CTD) units are used to collect hydrographic profiles, including temperature, conductivity and pressure as standard. Each profiler consists of an underwater unit and deck unit or SEARAM. Auxiliary sensors, such as fluorometers, dissolved oxygen sensors and transmissometers, and carousel water samplers are commonly added to the underwater unit.

Underwater unit

The CTD underwater unit (SBE 9 or SBE 9 plus) comprises a protective cage (usually with a carousel water sampler), including a main pressure housing containing power supplies, acquisition electronics, telemetry circuitry, and a suite of modular sensors. The original SBE 9 incorporated Sea-Bird's standard modular SBE 3 temperature sensor and SBE 4 conductivity sensor, and a Paroscientific Digiquartz pressure sensor. The conductivity cell was connected to a pump-fed plastic tubing circuit that could include auxiliary sensors. Each SBE 9 unit was custom built to individual specification. The SBE 9 was replaced in 1997 by an off-the-shelf version, termed the SBE 9 plus, that incorporated the SBE 3 plus (or SBE 3P) temperature sensor, SBE 4C conductivity sensor and a Paroscientific Digiquartz pressure sensor. Sensors could be connected to a pump-fed plastic tubing circuit or stand-alone.

Temperature, conductivity and pressure sensors

The conductivity, temperature, and pressure sensors supplied with Sea-Bird CTD systems have outputs in the form of variable frequencies, which are measured using high-speed parallel counters. The resulting count totals are converted to numeric representations of the original frequencies, which bear a direct relationship to temperature, conductivity or pressure. Sampling frequencies for these sensors are typically set at 24 Hz.

The temperature sensing element is a glass-coated thermistor bead, pressure-protected inside a stainless steel tube, while the conductivity sensing element is a cylindrical, flow-through, borosilicate glass cell with three internal platinum electrodes. Thermistor resistance or conductivity cell resistance, respectively, is the controlling element in an optimized Wien Bridge oscillator circuit, which produces a frequency output that can be converted to a temperature or conductivity reading. These sensors are available with depth ratings of 6800 m (aluminium housing) or 10500 m (titanium housing). The Paroscientific Digiquartz pressure sensor comprises a quartz crystal resonator that responds to pressure-induced stress, and temperature is measured for thermal compensation of the calculated pressure.

Additional sensors

Optional sensors for dissolved oxygen, pH, light transmission, fluorescence and others do not require the very high levels of resolution needed in the primary CTD channels, nor do these sensors generally offer variable frequency outputs. Accordingly, signals from the auxiliary sensors are acquired using a conventional voltage-input multiplexed A/D converter (optional). Some Sea-Bird CTDs use a strain gauge pressure sensor (Senso-Metrics) in which case their pressure output data is in the same form as that from the auxiliary sensors as described above.

Deck unit or SEARAM

Each underwater unit is connected to a power supply and data logging system: the SBE 11 (or SBE 11 plus) deck unit allows real-time interfacing between the deck and the underwater unit via a conductive wire, while the submersible SBE 17 (or SBE 17 plus) SEARAM plugs directly into the underwater unit and data are downloaded on recovery of the CTD. The combination of SBE 9 and SBE 17 or SBE 11 are termed SBE 917 or SBE 911, respectively, while the combinations of SBE 9 plus and SBE 17 plus or SBE 11 plus are termed SBE 917 plus or SBE 911 plus.

Specifications

Specifications for the SBE 9 plus underwater unit are listed below:

Further details can be found in the manufacturer's specification sheet.

BODC Processing

Data were provided to BODC in .mat format for all missions except mission 383 (M383) where the autosub was not recovered. Time, navigation and autosub depth (m) data were contained in the autosub ADCP data files which were also provided to BODC. Data were transferred from .mat format into the BODC internal format.

The following table shows how the variables within the matlab files were mapped to appropriate BODC parameter codes:

Data were screened using in-house visualisation software and suspect values were flagged with the appropriate BODC quality control flag. Suspect flags were added to the start of several of the series where the sensors were thought to be still settling. Absent data were flagged and changed to the appropriate value.

Originator's Processing

A total of six autosub missions were carried out during the cruise. CTD data were collected on five successful missions as one mission was aborted as the autosub was not recoverable. Four out of five of the missions were test missions. The autosub missions carried out on this cruise were as follows:

Further details about the autosub missions can be found on page 23 of the cruise report.

Data processing

Data from the system were continuously logged whenever the autosub was switched on but, in order to prevent excessive wear on the pump, water was only pumped through the sensors once a predetermined pressure threshold was exceeded. Raw data were logged by the autosub central data logger and were initially extracted from the mission (.log) file using the autosub wgetasc software, producing Sea-Bird format (.dat) files.

Autosub TimeSync monitoring software was run during each mission in order to monitor the clock drift between underwater systems and various shipboard systems and was used to correct the time drift. A clock correction factor was calculated and applied to the log-sorted data based on the drifts of the data logger clock relative to the Sea-Bird clock. However, please be aware that the clock correction was not applied to the missions 379 and 380, and an only estimated time correction was applied. Therefore, there may be a mismatch between the CTD and other autosub data, with a potential offset of up to 35 seconds.

The .dat files were then processed in accordance with the recommendations of Sea-Bird Inc. for SBE-911plus data with oxygen, this included data conversion which applied the manufacturer's calibration using the JR097new.con file which contained the most recent calibration data. Following the Sea-Bird processing the files were converted into matlab format using the Matlab scriptcnv2mat_asub. Further details on the processing steps can be found on page 39 of the cruise report.

Project Information

AutoSub Under Ice (AUI) Programme

AutoSub was an interdisciplinary Natural Environment Research Council (NERC) thematic programme conceived to investigate the marine environment of floating ice shelves with a view to advancing the understanding of their role in the climate system.

The AUI programme had the following aims:

• To attain the programme's scientific objectives through an integrated programme based on interdisciplinary collaborations and an international perspective
• To develop a data management system for the archiving and collation of data collected by the programme, and to facilitate the eventual exploitation of this record by the community
• To provide high-quality training to develop national expertise in the use of autonomous vehicles in the collection of data from remote environments and the integration of such tools in wider programmes of research
• To stimulate and facilitate the parameterising of sub-ice shelf processes in climate models, and to further demonstrate the value of autonomous vehicles as platforms for data collection among the wider oceanographic and polar community

Following the invitation of outline bids and peer review of fully developed proposals, eight research threads were funded as part of AUI:

Physical Oceanography

• ISOTOPE: Ice Shelf Oceanography: Transports, Oxygen-18 and Physical Exchanges.
• Evolution and impact of Circumpolar Deep Water on the Antarctic continental shelf.
• Oceanographic conditions and processes beneath Ronne Ice Shelf (OPRIS).

Glaciology and Sea Ice

• Autosub investigation of ice sheet boundary conditions beneath Pine Island Glacier.
• Observations and modelling of coastal polynya and sea ice processes in the Arctic and Antarctic.
• Sea ice thickness distribution in the Bellingshausen Sea.

Geology and Geophysics

• Marine geological processes and sediments beneath floating ice shelves in Greenland and Antarctica: investigations using the Autosub AUV.

Biology

• Controls on marine benthic biodiversity and standing stock in ice-covered environments.

The National Oceanography Centre Southampton (NOCS) hosted the AUI programme with ten further institutions collaborating in the project. The project ran from April 2000 until the end of March 2005, with some extensions to projects beyond this date because of research cruise delays. The following cruises were the fieldwork component of the AUI project:

Table 1: Details of the RRS James Clark Ross AUI cruises.

All the cruises utilised the AutoSub autonomous, unmanned and untethered underwater vehicle to collect observations beneath sea-ice and floating ice shelves. AutoSub can be fitted with a range of oceanographic sensors such as:

• Conductivity Temperature Depth (CTD) instruments
• Acoustic Doppler Current Profillers (ADCP)
• A water sampler
• Swath bathymetry systems
• Cameras

In addition to use of AutoSub during each cruise measurements were taken from ship. These varied by cruise but included:

• Ship underway measurements and sampling for parameters such as:
  • Salinity
  • Temperature
  • Fluorescence
  • Oxygen 18 isotope enrichment in water
  • Bathymetry using a swath bathymetry system
• Full-depth CTD casts for with observations of samples taken for parameters such as:
  • Salinity
  • Temperature
  • Fluorescence
  • Optical transmissivity
  • Dissolved oxygen
  • Oxygen 18 isotope enrichment in water
  • Water CFC content
• Sea floor photography and video using the WASP system
• Sea floor sampling with trawls/rock dredges
• Sea ice observations (ASPeCt), drifters and sampling

The AutoSub project also included numerical modelling work undertaken at University College London, UK.

The project included several firsts including the first along-track observations beneath an ice shelf using an autonomous underwater vehicle. The AutoSub vehicle was developed and enhanced throughout this programme and has now become part of the NERC equipment pool for general use by the scientific community. Further information for each cruise can be found in the respective cruise reports (links in Table 1).

Data Activity or Cruise Information

Cruise

Complete Cruise Metadata Report is available here

Fixed Station Information

No Fixed Station Information held for the Series

BODC Quality Control Flags

The following single character qualifying flags may be associated with one or more individual parameters with a data cycle:

SeaDataNet Quality Control Flags

The following single character qualifying flags may be associated with one or more individual parameters with a data cycle: